View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_16 (Length: 395)
Name: NF18053_high_16
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 15944340 - 15943954
Alignment:
| Q |
1 |
tgatttttcctcttgattttcttcatgatcataaccttcattgtttctaggactatccaaaacaacacccttttgcaaatccttgttactattttgatct |
100 |
Q |
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| T |
15944340 |
tgatttttcctcttgattttcttcatgatcataaccttcattgtttctaggactatccaaaacaacacccttttgcaaatccttgttaatattttgatct |
15944241 |
T |
|
| Q |
101 |
tgaagctttctccaataaacaacatctaaaccatcttcatcaacaataagtcccttgatattaccttcaattctctcaaaagcttttgcttgaggcacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15944240 |
tgaagctttctccaataaacaacatctaaaccatcttcatcaacaataagtcccttgatattaccttcaattctctcaaaagcttttgcttgaggcacag |
15944141 |
T |
|
| Q |
201 |
catttctatgttctaaacttggtctagaagaagtgttgttattgtttacaatcacatttcttctctttgctctacaacacttaataacaaagaagaaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15944140 |
catttctatgttctaaacttggtctagaagaagtgttgttattgtttacaatcacatttcttctctttgctctacaacacttattaacaaagaagaaaat |
15944041 |
T |
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| Q |
301 |
tagagcagaaagaactaatgttcctgctgcagttgcagctacagcagttactatcttactatttgttgaagaatttgttgatgatgt |
387 |
Q |
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| T |
15944040 |
tagagcagaaagaactaatgttcctgctgcagttgcagctacagcagttactatcttactatttgttgaagaatttgttgatgatgt |
15943954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 26282745 - 26282696
Alignment:
| Q |
98 |
tcttgaagctttctccaataaacaacatctaaaccatcttcatcaacaat |
147 |
Q |
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|||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
26282745 |
tcttcaagttttctccaataaatcacatctaaaccatcttcatcaacaat |
26282696 |
T |
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