View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_17 (Length: 375)
Name: NF18053_high_17
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 15944317 - 15944662
Alignment:
| Q |
9 |
gaagaatatcaagaggaaaaatcaaagtctattcaagaaatgcatttgcttagaggaaaatcttcaacctctcacatgaatatttttccacaagaagagt |
108 |
Q |
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| T |
15944317 |
gaagaaaatcaagaggaaaaatcagaatctattcaagaaatgcatttgcttagaggaaaatcttcaacctctcacatgaatatttttccacaagaagagt |
15944416 |
T |
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| Q |
109 |
catatacaattatgaaaattactcctcctgctcctcctcctattgttcctactactcaaccattttctctaaaccttcttccttcatcaccaaaaccacc |
208 |
Q |
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| T |
15944417 |
cgtatacaattatgaaaattactcctcctgctcctcctcctattgttcctactactcaaccattttctctaaaccttcttccttcatcaccaaaaccacc |
15944516 |
T |
|
| Q |
209 |
ctccacttctttttcatcaattccacaaatttcaagtcctttagtgtcatcaattccaagtatatctggtgatagaaagagtcaaaaaccgccgnnnnnn |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15944517 |
ctccacttctttttcatcaattccacaaatttcaagtcctttagtgtcatcaattccaagtatatctggtgatagaaagagtcaaaaaccgccgcctcct |
15944616 |
T |
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| Q |
309 |
nnnnnnnnnnnaccagtacctgatagaaaaatctcagcaccgccgc |
354 |
Q |
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| T |
15944617 |
cctcctcctccaccagtacctgatagaaaaatctcagcaccgccgc |
15944662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 26282822 - 26282887
Alignment:
| Q |
9 |
gaagaatatcaagaggaaaaatcaaagtctattcaagaaatgcatttgcttagaggaaaatcttca |
74 |
Q |
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|||||| |||||| | ||||||| ||||| ||||||||||| | | | |||||||||||||||||| |
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| T |
26282822 |
gaagaaaatcaagtgaaaaaatctaagtccattcaagaaatacctcttcttagaggaaaatcttca |
26282887 |
T |
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