View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18053_high_18 (Length: 369)

Name: NF18053_high_18
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18053_high_18
NF18053_high_18
[»] chr6 (4 HSPs)
chr6 (27-244)||(33010394-33010603)
chr6 (306-350)||(33010663-33010707)
chr6 (171-212)||(4749414-4749455)
chr6 (158-214)||(27434752-27434808)
[»] scaffold0022 (1 HSPs)
scaffold0022 (91-222)||(101072-101204)
[»] chr4 (5 HSPs)
chr4 (91-222)||(24091-24223)
chr4 (91-197)||(13914737-13914844)
chr4 (175-222)||(14288161-14288208)
chr4 (180-222)||(13914751-13914793)
chr4 (158-214)||(18066749-18066805)
[»] scaffold0289 (1 HSPs)
scaffold0289 (91-222)||(22132-22264)
[»] chr8 (25 HSPs)
chr8 (91-222)||(10895839-10895971)
chr8 (91-222)||(287297-287429)
chr8 (90-134)||(15605885-15605929)
chr8 (90-134)||(15614238-15614282)
chr8 (92-133)||(15624450-15624491)
chr8 (90-133)||(15637226-15637269)
chr8 (91-133)||(15605704-15605746)
chr8 (90-128)||(15637048-15637086)
chr8 (92-133)||(15648238-15648279)
chr8 (174-222)||(12167193-12167241)
chr8 (174-222)||(12411621-12411669)
chr8 (93-133)||(15637777-15637817)
chr8 (171-215)||(16291972-16292016)
chr8 (118-222)||(25113411-25113517)
chr8 (90-133)||(15637409-15637452)
chr8 (171-222)||(17895037-17895088)
chr8 (91-133)||(15605385-15605427)
chr8 (91-133)||(15613738-15613780)
chr8 (95-133)||(15613911-15613949)
chr8 (115-196)||(40267360-40267442)
chr8 (92-133)||(15606069-15606110)
chr8 (92-133)||(15614422-15614463)
chr8 (92-133)||(15637593-15637634)
chr8 (101-133)||(15624095-15624127)
chr8 (101-133)||(15647883-15647915)
[»] scaffold0018 (1 HSPs)
scaffold0018 (138-222)||(67256-67340)
[»] chr3 (7 HSPs)
chr3 (115-215)||(6440879-6440980)
chr3 (91-222)||(9270763-9270891)
chr3 (171-222)||(6445181-6445232)
chr3 (91-133)||(2766128-2766170)
chr3 (158-222)||(20919306-20919370)
chr3 (158-222)||(20928268-20928332)
chr3 (158-222)||(37197867-37197931)
[»] chr1 (6 HSPs)
chr1 (92-215)||(3832141-3832266)
chr1 (91-222)||(3417283-3417414)
chr1 (91-197)||(8314021-8314128)
chr1 (91-212)||(11440796-11440916)
chr1 (171-222)||(8314035-8314086)
chr1 (91-222)||(46514343-46514475)
[»] chr2 (2 HSPs)
chr2 (158-222)||(45049537-45049601)
chr2 (174-222)||(5243273-5243321)
[»] chr7 (1 HSPs)
chr7 (91-133)||(7946588-7946630)
[»] chr5 (2 HSPs)
chr5 (161-222)||(19205915-19205976)
chr5 (174-215)||(29857750-29857791)
[»] scaffold0191 (1 HSPs)
scaffold0191 (122-208)||(17054-17139)
[»] scaffold0003 (1 HSPs)
scaffold0003 (158-214)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 33010394 - 33010603
Alignment:
Q  27 ctatctctatctctattataataaacaaatagcttcctaaaaatcaacagtacactgtacacctgtacacgtgacatcttcatattgctcatctcattta 126  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||| || ||||        ||||||||||||||||||||||||||||||    
T  33010394 ctatctctatctctattataataaacaaacggcttcctaaaaatcaacagtacattggacac--------gtgacatcttcatattgctcatctcattta 33010485  T
Q  127 atgtttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaactga 226  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||    
T  33010486 atgtttttcaccaaccaattaaaattgatgttgattcaattatattttattagttaatcaaaatagatcatgacttatttatttttcatcagccaactga 33010585  T
Q  227 gctaagctcacgagtacg 244  Q
    ||||||||||||||||||    
T  33010586 gctaagctcacgagtacg 33010603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 33010663 - 33010707
Alignment:
Q  306 gtacataataaccgaacacgcatagaccaagatttgcatgcttgg 350  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    
T  33010663 gtacataataaccaaacacgcatagaccaagatttgcaagcttgg 33010707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 4749414 - 4749455
Alignment:
Q  171 ttttattagccaatcaaaatagatcataactcatttattttt 212  Q
    |||| |||||||||||||| ||||||| ||||||||||||||    
T  4749414 ttttcttagccaatcaaaagagatcatgactcatttattttt 4749455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 27434752 - 27434808
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 214  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  27434752 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 27434808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 101072 - 101204
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || |||||||| |||  || |||||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  101072 gtacacatggcatcttcaaatttttcttctcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 101171  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    | |||||| ||||||||||||||||| ||||||    
T  101172 tggatcatgactcatttatttttcataagccaa 101204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 24223 - 24091
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || |||||||| ||| ||| |||||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  24223 gtacacatggcatcttcaaatttctcttctcatttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 24124  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    | ||| || ||||||||||||||||| ||||||    
T  24123 tggataatgactcatttatttttcattagccaa 24091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 13914844 - 13914737
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || |||||||| |||  || |||||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  13914844 gtacacatggcatcttcaaatttatcttctcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 13914745  T
Q  190 tagatcat 197  Q
    | ||||||    
T  13914744 ttgatcat 13914737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 14288208 - 14288161
Alignment:
Q  175 attagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  14288208 attagccaatcaaaatgaatcatgactcatttatttttcattagccaa 14288161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 13914793 - 13914751
Alignment:
Q  180 ccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    |||||||||||||||||| |||||||||||||| || ||||||    
T  13914793 ccaatcaaaatagatcatgactcatttattttttattagccaa 13914751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 18066805 - 18066749
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 214  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  18066805 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 18066749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 22264 - 22132
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| ||||||||||  ||| |||||||||||||||| ||||||| |||| ||| |||||  ||  ||||||| |||| ||||||| | |||||||||    
T  22264 gtacacatgacatcttctaatttctcatctcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaaa 22165  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    || ||||| ||||||||||||||||| ||||||    
T  22164 taaatcatgactcatttatttttcattagccaa 22132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 10895839 - 10895971
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || |||||||| ||| |||||||||||||||||||||  | |||| ||| || || |||  ||||||| |||| ||||||||| |||||||||    
T  10895839 gtacacatgccatcttcaaatttctcatctcatttaatgtttttttatcaaccaatcaatatggatcatgactcatttattttttattagtcaatcaaaa 10895938  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    | |||||| ||||||||||||||||| ||||||    
T  10895939 tggatcatgactcatttatttttcattagccaa 10895971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 287297 - 287429
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || ||| |||| ||| ||| |||||||||||  ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  287297 gtacacatggcattttcaaatttctcttctcatttaatactttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 287396  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    | |||||| |||||||||||||| || ||||||    
T  287397 tggatcatgactcatttattttttattagccaa 287429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 15605929 - 15605885
Alignment:
Q  90 tgtacacgtgacatcttcatattgctcatctcatttaatgttttt 134  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  15605929 tgtacacgtgacatcttcatatttctcatctcatttaatgttttt 15605885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 15614282 - 15614238
Alignment:
Q  90 tgtacacgtgacatcttcatattgctcatctcatttaatgttttt 134  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  15614282 tgtacacgtgacatcttcatatttctcatctcatttaatgttttt 15614238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 15624491 - 15624450
Alignment:
Q  92 tacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  15624491 tacacgtgacatcttcatatttctcatctcatttaatgtttt 15624450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 15637269 - 15637226
Alignment:
Q  90 tgtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  15637269 tgtacacgtgtcatcttcatatttctcatctcatttaatgtttt 15637226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 15605746 - 15605704
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  15605746 gtacacgtgatatcttcatatttctcatctcatttaatgtttt 15605704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 15637086 - 15637048
Alignment:
Q  90 tgtacacgtgacatcttcatattgctcatctcatttaat 128  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  15637086 tgtacacgtgacatcttcatatttctcatctcatttaat 15637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 15648279 - 15648238
Alignment:
Q  92 tacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  15648279 tacacctgacatcttcatatttctcatctcatttaatgtttt 15648238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 12167241 - 12167193
Alignment:
Q  174 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  12167241 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 12167193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 12411669 - 12411621
Alignment:
Q  174 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  12411669 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 12411621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 15637817 - 15637777
Alignment:
Q  93 acacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  15637817 acacgtgatatcttcatatttctcatctcatttaatgtttt 15637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 16291972 - 16292016
Alignment:
Q  171 ttttattagccaatcaaaatagatcataactcatttatttttcat 215  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||    
T  16291972 ttttattatccaatcaaaatggatcatgactcatttatttttcat 16292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 25113517 - 25113411
Alignment:
Q  118 tctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa--tagatcataactcatttatttttca 214  Q
    |||||||||||||||||  | || | ||||||||| |||  ||||||| |||||| || ||| ||||||||||  |||||||| ||||||||||||||||    
T  25113517 tctcatttaatgtttttttatcatccaattaaaatagattatgactcacttatatatt-ttaaccaatcaaaaaatagatcatgactcatttatttttca 25113419  T
Q  215 tcagccaa 222  Q
    | ||||||    
T  25113418 ttagccaa 25113411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 15637452 - 15637409
Alignment:
Q  90 tgtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||    
T  15637452 tgtacatgtgacatcttaatatttctcatctcatttaatgtttt 15637409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 17895088 - 17895037
Alignment:
Q  171 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    |||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  17895088 ttttcttagccaatcaaaagagatcatgactcatttattttttatgagccaa 17895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 15605427 - 15605385
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||    
T  15605427 gtacatgtgccatcttcatatttctcatctcatttaatgtttt 15605385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 15613780 - 15613738
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||    
T  15613780 gtacatgtgccatcttcatatttctcatctcatttaatgtttt 15613738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 15613949 - 15613911
Alignment:
Q  95 acgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  15613949 acgtgacatctacatatttctcatctcatttaatgtttt 15613911  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 40267442 - 40267360
Alignment:
Q  115 tcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatca 196  Q
    ||||||||||||||| ||||| | |||| ||| ||||| ||| |||| ||| |||  |||||||||||||||||||| |||||    
T  40267442 tcatctcatttaatgcttttttatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaaatggatca 40267360  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 15606110 - 15606069
Alignment:
Q  92 tacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||| |||| ||||||||||| ||||||||||||||||||||    
T  15606110 tacatgtgatatcttcatatttctcatctcatttaatgtttt 15606069  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 15614463 - 15614422
Alignment:
Q  92 tacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||| |||| ||||||||||| ||||||||||||||||||||    
T  15614463 tacatgtgatatcttcatatttctcatctcatttaatgtttt 15614422  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 15637634 - 15637593
Alignment:
Q  92 tacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    |||| |||||||||| ||||| ||||||||||||||||||||    
T  15637634 tacatgtgacatcttaatatttctcatctcatttaatgtttt 15637593  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 15624127 - 15624095
Alignment:
Q  101 catcttcatattgctcatctcatttaatgtttt 133  Q
    |||||||||||| ||||||||||||||||||||    
T  15624127 catcttcatatttctcatctcatttaatgtttt 15624095  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 15647915 - 15647883
Alignment:
Q  101 catcttcatattgctcatctcatttaatgtttt 133  Q
    |||||||||||| ||||||||||||||||||||    
T  15647915 catcttcatatttctcatctcatttaatgtttt 15647883  T

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Target: scaffold0018 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 67340 - 67256
Alignment:
Q  138 caactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    |||| ||||||||| |||  ||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  67340 caaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaatggatcataactcatttatttttcattagccaa 67256  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 6440980 - 6440879
Alignment:
Q  115 tcatctcatttaatgttttt-caccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttc 213  Q
    |||||||||||||||||||| || |||| ||| |||||  |   |||||||||||| ||||||| ||||||||||||  ||||| |||||||||||||||    
T  6440980 tcatctcatttaatgttttttcatcaaccaatcaaaatataccatgactcaattattttttatttgccaatcaaaatgaatcatgactcatttatttttc 6440881  T
Q  214 at 215  Q
    ||    
T  6440880 at 6440879  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 9270891 - 9270763
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || |||||||  ||| |||||||||||||||| ||||||| |||| ||| |||||  ||  ||||||| ||    |||||| |||||| ||||    
T  9270891 gtacacatggcatcttctaatttctcatctcatttaatgctttttcatcaaccaatcaaaatatataatgactcattt----tttatttgccaattaaaa 9270796  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    || ||||| ||||||||||||||||| ||||||    
T  9270795 taaatcatgactcatttatttttcattagccaa 9270763  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 6445232 - 6445181
Alignment:
Q  171 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    |||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  6445232 ttttcttagccaatcaaaagagatcatgactcatttattttttatgagccaa 6445181  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 2766170 - 2766128
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  2766170 gtacatgtgacatcttcatattcttcatctcatttaatgtttt 2766128  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 20919306 - 20919370
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||||| |||| ||||||||||||||||||||   |||| || |||||| |||||| |||||||    
T  20919306 tgactcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaa 20919370  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 20928268 - 20928332
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||||| |||| ||||||||||||||||||||   |||| || |||||| |||||| |||||||    
T  20928268 tgactcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaa 20928332  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 37197867 - 37197931
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||||| |||| |||||||| |||||||||||   |||| || |||||| ||||||||||||||    
T  37197867 tgactcatttattttttattaaccaatcaaaatgattcatgacacatttagttttcatcagccaa 37197931  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 3832141 - 3832266
Alignment:
Q  92 tacacgtgacatcttcatattgctcatctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaat 190  Q
    |||| |||||||||||||  |  ||||||||||||||||||||| | |||| ||| ||||| ||| |||| ||| |||  |||||||||||||||||| |    
T  3832141 tacatgtgacatcttcatgctcttcatctcatttaatgtttttctatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaatt 3832240  T
Q  191 agatc-ataactcatttatttttcat 215  Q
     |||| || |||||||||||||||||    
T  3832241 ggatcaatgactcatttatttttcat 3832266  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 3417283 - 3417414
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgt-ttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| ||||||||||||||| | ||||||||||||||  |||| | |||| ||| |||||   | ||||||||   || || |||||| |||||||||    
T  3417283 gtacacatgacatcttcatatttc-catctcatttaatgcatttttatcaaccaatcaaaatgtttattgactcatccattttctattagtcaatcaaaa 3417381  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    | |||||| ||||||||||||||||||||||||    
T  3417382 tggatcatgactcatttatttttcatcagccaa 3417414  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 8314128 - 8314021
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| ||||||||||| ||| ||  |||||||||||||||||  | |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||    
T  8314128 gtacacatgacatcttcaaatttcttttctcatttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 8314029  T
Q  190 tagatcat 197  Q
    | ||||||    
T  8314028 ttgatcat 8314021  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 11440796 - 11440916
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgt-ttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| ||||||||||||||  ||||||| ||||||||  |||| |  ||| ||| ||||| ||| || ||||| |||| ||||||||| |||||||||    
T  11440796 gtacacatgacatcttcatat--ctcatctaatttaatgcatttttattaaccaatcaaaatggatcttaactcatttattttttattagtcaatcaaaa 11440893  T
Q  190 tagatcataactcatttattttt 212  Q
    | |||||| ||||||||||||||    
T  11440894 tggatcatgactcatttattttt 11440916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 8314086 - 8314035
Alignment:
Q  171 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    |||||| | |||||||||||||||||| |||||||||||||| || ||||||    
T  8314086 ttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaa 8314035  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 46514343 - 46514475
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaa 189  Q
    |||||| || |||||||  ||| |||||||||||||||| ||||||| |||| ||| |||||  ||   |||||| |||  |||||||  ||||||||||    
T  46514343 gtacacatggcatcttctaatttctcatctcatttaatgttttttcatcaaccaatcaaaatatatcacgactcatttactttttatttaccaatcaaaa 46514442  T
Q  190 tagatcataactcatttatttttcatcagccaa 222  Q
    |  || || | ||||||||||||||| ||||||    
T  46514443 tgaatgatgattcatttatttttcattagccaa 46514475  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 45049537 - 45049601
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||||| |||  |||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  45049537 tgactcatttaatttttattagccaatcaaaatggatcatgactcatttatttttcattagccaa 45049601  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 5243321 - 5243273
Alignment:
Q  174 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  5243321 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 5243273  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 7946630 - 7946588
Alignment:
Q  91 gtacacgtgacatcttcatattgctcatctcatttaatgtttt 133  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  7946630 gtacatgtgacatcttcatattcttcatctcatttaatgtttt 7946588  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 19205976 - 19205915
Alignment:
Q  161 ctcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 222  Q
    |||| |||| || |||||||||||| |||| |||||| |||||| |||||||||| ||||||    
T  19205976 ctcacttattttatattagccaatctaaatggatcatgactcatctatttttcatgagccaa 19205915  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 29857750 - 29857791
Alignment:
Q  174 tattagccaatcaaaatagatcataactcatttatttttcat 215  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  29857750 tattatccaatcaaaatggatcatgactcatttatttttcat 29857791  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 17139 - 17054
Alignment:
Q  122 atttaatgttttt-caccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttat 208  Q
    ||||||||||||| || |||| ||| ||||| |||  ||||||| |||| |||||||| ||||| |||||||||||| ||| ||||||    
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaatagatcatgacttatttat 17054  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 52611 - 52555
Alignment:
Q  158 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 214  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  52611 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 52555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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