View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_20 (Length: 351)
Name: NF18053_high_20
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 13777127 - 13776804
Alignment:
| Q |
19 |
gcaacgcacttcttcattcgttagttaaatcaaagaagtttgattccgtgtggagtgtttataataacttgttgttgcgtgggttatcgcctactgtgat |
118 |
Q |
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| T |
13777127 |
gcaacgcacttcttcattcgttagttaaatcaaagaagtttgattccgtgtggagtgtttataataacttgttgtcgcgtgggttattgcctactctgat |
13777028 |
T |
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| Q |
119 |
cacatatggaattttattgaactgttgttgtaatcaaggtgattttagtaatgcccgcaaggtgtttgatgaaatgattcaaagaggaattgtacctaat |
218 |
Q |
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| T |
13777027 |
cacatatggaattttattgaactgttgttgtaatcagggtgattttagtaatgcccgcaaggtgtttgatgaaatgattcaaagaggaattgtacctaat |
13776928 |
T |
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| Q |
219 |
gtggtggtttacactattcttattcgagttttttgtaatgagggtgatatggatgaagcagagaggttttttaagttgatgagggaatctggggtggaac |
318 |
Q |
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| T |
13776927 |
gtggtggtttacactactcttattcgagttttttgtaatgagggtgatatggatgaagcagagaggtttcttaagttgatgagggaatctggggtggaac |
13776828 |
T |
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| Q |
319 |
cgaatttgtatacctatgttactc |
342 |
Q |
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| T |
13776827 |
cgaatttgtatacttatgttactc |
13776804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 13755978 - 13756164
Alignment:
| Q |
27 |
cttcttcattcgttagttaaatcaaagaagtttgattccgtgtggagtgtttataataacttgttgttgcgtgggttatcgcctactgtgatcaca---t |
123 |
Q |
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| T |
13755978 |
cttcctcattcgttagtcaaatcgaagaggtttcatttggtttggagtgtctctaataaccagttgttgcgcgggttataactaaccgtgatcaccagct |
13756077 |
T |
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| Q |
124 |
atggaattttattgaactgttgttgtaatcaaggtgattttagtaatgcccgcaaggtgtttgatgaaatgattcaaagaggaattg |
210 |
Q |
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| T |
13756078 |
atggaattttattgaaatgttgatgtaatcagggggattttagtaatgcctgcaatgtgtttgatgaaatgattcaaagaagaattg |
13756164 |
T |
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