View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18053_high_22 (Length: 332)

Name: NF18053_high_22
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18053_high_22
NF18053_high_22
[»] chr7 (2 HSPs)
chr7 (15-321)||(33867755-33868061)
chr7 (203-318)||(29266113-29266228)
[»] chr8 (2 HSPs)
chr8 (15-321)||(5769988-5770294)
chr8 (203-315)||(24471437-24471550)
[»] scaffold1234 (1 HSPs)
scaffold1234 (15-292)||(300-577)
[»] chr5 (2 HSPs)
chr5 (203-321)||(21269194-21269312)
chr5 (203-321)||(21271208-21271326)
[»] chr3 (3 HSPs)
chr3 (203-320)||(25435297-25435414)
chr3 (217-320)||(50828292-50828395)
chr3 (217-320)||(50847458-50847561)
[»] chr6 (2 HSPs)
chr6 (203-312)||(443035-443143)
chr6 (112-178)||(31449415-31449483)
[»] chr1 (1 HSPs)
chr1 (63-182)||(6522610-6522732)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 33867755 - 33868061
Alignment:
Q  15 caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867755 caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt 33867854  T
Q  115 gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867855 gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg 33867954  T
Q  215 aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867955 aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatgacgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc 33868054  T
Q  315 agttcat 321  Q
    |||||||    
T  33868055 agttcat 33868061  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 29266228 - 29266113
Alignment:
Q  203 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |    
T  29266228 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttgaaatgaaaaggtctggcacaatcaaacgaata 29266129  T
Q  303 agcaacaatttcagtt 318  Q
    | ||||||||||||||    
T  29266128 accaacaatttcagtt 29266113  T

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Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 5770294 - 5769988
Alignment:
Q  15 caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5770294 caggtatatgtataatttacatgataccatttaatttcttcaacacccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt 5770195  T
Q  115 gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg 214  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5770194 gctattgatatatatggtactgtcaaaatatacaagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg 5770095  T
Q  215 aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5770094 aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc 5769995  T
Q  315 agttcat 321  Q
    |||||||    
T  5769994 agttcat 5769988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 24471437 - 24471550
Alignment:
Q  203 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgtttt-ggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaag 301  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| | ||||||||||||||||||    
T  24471437 atgcaaggactgaatgtgcaggatcagaaaacctttgcaatgatgtttttggtgcatatgacgtcgttgaaatgaaaaattatggcacaatcaaacgaag 24471536  T
Q  302 aagcaacaatttca 315  Q
    ||||||||||||||    
T  24471537 aagcaacaatttca 24471550  T

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Target: scaffold1234 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 300 - 577
Alignment:
Q  15 caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  300 caggtatatgtataatttacatgataccatttaatttcttcaacacccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt 399  T
Q  115 gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg 214  Q
    |  |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  400 gcaattgatatatatggtattgtcaaaatatacaagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg 499  T
Q  215 aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaat 292  Q
    |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  500 aatgtgcaggattagaaaacctttgcaattatgttttggttcatatggcgtcgttaaaatgaaaaagtctggcacaat 577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 21269194 - 21269312
Alignment:
Q  203 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga 302  Q
    ||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  21269194 atgcacggactaaatgtgcaggatcagaagatctttgcaatgatgttttggtgcatatggtgtcgttgaaatgaaaaagtctggcacaatcaaacgaaga 21269293  T
Q  303 agcaacaatttcagttcat 321  Q
    |||||||||||||||||||    
T  21269294 agcaacaatttcagttcat 21269312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 21271208 - 21271326
Alignment:
Q  203 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga 302  Q
    ||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  21271208 atgcacggactaaatgtgcaggatcagaagatctttgcaatgatgttttggtgcatatggtgtcgttgaaatgaaaaagtctggcacaatcaaacgaaga 21271307  T
Q  303 agcaacaatttcagttcat 321  Q
    |||||||||||||||||||    
T  21271308 agcaacaatttcagttcat 21271326  T

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Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 25435297 - 25435414
Alignment:
Q  203 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga 302  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  25435297 atgcagggactgtatgtgcaggatcagaaaacctttgcactgatgttttagtgcacatggcgtcgttgaaatgaaaaagtctggcacaatcaaacaaaga 25435396  T
Q  303 agcaacaatttcagttca 320  Q
    ||||||||||||||||||    
T  25435397 agcaacaatttcagttca 25435414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 50828395 - 50828292
Alignment:
Q  217 tgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttcag 316  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||    
T  50828395 tgtgcaggatcggaaaacctttgcagtgatgttttagtgcatatggcgtcgttgaaatgaaaaagtctggtacaatcaaacaaagaagcaacaatttcag 50828296  T
Q  317 ttca 320  Q
    ||||    
T  50828295 ttca 50828292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 50847458 - 50847561
Alignment:
Q  217 tgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttcag 316  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||    
T  50847458 tgtgcaggatcggaaaacctttgcagtgatgttttagtgcatatggcgtcgttgaaatgaaaaagtctggtacaatcaaacaaagaagcaacaatttcag 50847557  T
Q  317 ttca 320  Q
    ||||    
T  50847558 ttca 50847561  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 443035 - 443143
Alignment:
Q  203 atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga 302  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||    
T  443035 atgcagggactaaatgtgcag-atcagaagacctttgcaatgatgttttggtgcatatggtgtcgatgaaatgaaaaagtctggcacaatcaaactaaga 443133  T
Q  303 agcaacaatt 312  Q
    ||||||||||    
T  443134 agcaacaatt 443143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 31449415 - 31449483
Alignment:
Q  112 tttgttattgatatatatggtactgtcaaaatatat--aagagaaacaagaatttatgatactgctttt 178  Q
    |||| |||| ||||||||||||||||||| ||||||  || ||||| |||| |||||| ||||||||||    
T  31449415 tttgctatttatatatatggtactgtcaacatatatacaaaagaaataagattttatgctactgctttt 31449483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 6522610 - 6522732
Alignment:
Q  63 acatgttttagcattgtctttttatgtcact-tgggctgctt-aaattgtgttt-gttattgatatatatggtactgtcaaaatatataagagaaacaag 159  Q
    |||||||||| |||| ||||||||||| ||| |||| ||||  ||||||||||| | |||||||||| ||| ||||||||||||||| |||||||| |||    
T  6522610 acatgttttaccattctctttttatgttactgtgggatgctacaaattgtgttttgctattgatatagatgctactgtcaaaatatacaagagaaataag 6522709  T
Q  160 aatttatgatactgcttttctaa 182  Q
    |  ||||| ||||| | ||||||    
T  6522710 atattatgctactgttattctaa 6522732  T

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