View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_27 (Length: 266)
Name: NF18053_high_27
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 5748318 - 5748550
Alignment:
| Q |
17 |
atcaagtgtaaaaaataaaatgtatagcactattgagttcattgatataaaaaataaaattaagttacacattattcacgaataaaattattccccggct |
116 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |
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| T |
5748318 |
atcaagtgtaaaaaatgaaaggtatagcacaattgagtacattgatataaaaaataaaataaagttacacattattcacgaataaaattatcccccggtt |
5748417 |
T |
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| Q |
117 |
ataaagtttcaatcgatcaagcctcttattgaaataattcacatccttactagcaagatcccctcaaaagaaaatccttactagtaagatagcaaaacaa |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5748418 |
atagagtttcaatcgatcaagcctcttattgaaataattcacatccttactagcaagatcccctcaaaagaaaatccttactagtaagatagcaagacaa |
5748517 |
T |
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| Q |
217 |
tatttgttcaaaaagaaaaagacaactaaagaa |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5748518 |
catttgttcaaaaagaaaaagacaactaaagaa |
5748550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 5785277 - 5785509
Alignment:
| Q |
17 |
atcaagtgtaaaaaataaaatgtatagcactattgagttcattgatataaaaaataaaattaagttacacattattcacgaataaaattattccccggct |
116 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |
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| T |
5785277 |
atcaagtgtaaaaaatgaaaggtatagcacaattgagtacattgatataaaaaataaaataaagttacacattattcacgaataaaattatcccccggtt |
5785376 |
T |
|
| Q |
117 |
ataaagtttcaatcgatcaagcctcttattgaaataattcacatccttactagcaagatcccctcaaaagaaaatccttactagtaagatagcaaaacaa |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5785377 |
atagagtttcaatcgatcaagcctcttattgaaataattcacatccttactagcaagatcccctcaaaagaaaatccttactagtaagatagcaagacaa |
5785476 |
T |
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| Q |
217 |
tatttgttcaaaaagaaaaagacaactaaagaa |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5785477 |
catttgttcaaaaagaaaaagacaactaaagaa |
5785509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 6018888 - 6018726
Alignment:
| Q |
73 |
aaattaagttacacattattcacgaataaaattattccccggctataaagtttcaatcgatcaagcctcttattgaaataattcacatccttactagcaa |
172 |
Q |
| |
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||||||| ||||| |||||| ||||| ||| ||||||| |||| || | ||| |||| |||||||||| | | |||||| ||||||||||||||||| |
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| T |
6018888 |
aaattaatttacatattatttacgaacaaatttattcctcggccgtagaatttaaatcaatcaagcctcagagtaaaataactcacatccttactagcag |
6018789 |
T |
|
| Q |
173 |
gatcccctcaaaagaaaatccttactagtaagatagcaaaacaatatttgttcaaaaagaaaa |
235 |
Q |
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||| ||| |||| |||||||||||||| |||||||||| |||| |||||||||||||||||| |
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| T |
6018788 |
gatacccctaaaaaaaaatccttactagcaagatagcaagacaacatttgttcaaaaagaaaa |
6018726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 6022636 - 6022412
Alignment:
| Q |
18 |
tcaagtgtaaaaaataaaatgtatagcactattgagttcattgat---ataaaaaataa--aattaagttacacattattcacgaataaaattattcccc |
112 |
Q |
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||||||||||||||| ||| |||||| || |||||||||||| || | || |||||| |||||| ||| | ||||||||||| ||||||||||| | |
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| T |
6022636 |
tcaagtgtaaaaaattaaaggtatagaacaattgagttcattcatcgcaaaagaaataataaattaatttatatgttattcacgaacaaaattattcctc |
6022537 |
T |
|
| Q |
113 |
ggctataaagtttcaatcgatcaagcctcttattgaaataattcacatccttactagcaagatcccc--tcaaaagaaaatccttactagtaagatagca |
210 |
Q |
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|| ||| | |||||||| |||||| |||||||||||||| |||||||||||| |||| ||| ||| |||| |||||||||||||| ||||||| | |
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| T |
6022536 |
cgccatagaatttcaatcaatcaagtatcttattgaaataactcacatccttacaagcaggatacccataaaaaaaaaaatccttactagcaagatagaa |
6022437 |
T |
|
| Q |
211 |
aaacaatatttgttcaaaaagaaaa |
235 |
Q |
| |
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| ||| |||||||||||||||||| |
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| T |
6022436 |
agacatcatttgttcaaaaagaaaa |
6022412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 6016107 - 6016028
Alignment:
| Q |
155 |
tcacatccttactagcaagatcccctcaaaagaaaatccttactagtaagatagcaaaacaatatttgttcaaaaagaaaa |
235 |
Q |
| |
|
||||||||||||||||| ||| ||| |||| |||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
6016107 |
tcacatccttactagcaggatacccctaaaa-aaaatccttactagcaagacagcaaaacaacatttgttcaaaaagaaaa |
6016028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 6010863 - 6010784
Alignment:
| Q |
155 |
tcacatccttactagcaagatcccctcaaaagaaaatccttactagtaagatagcaaaacaatatttgttcaaaaagaaaa |
235 |
Q |
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| T |
6010863 |
tcacatccttactagcatgatacccctaaaacaat-tccttactagcaagatagcaagacaacatttgttcaaaaagaaaa |
6010784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 2900408 - 2900445
Alignment:
| Q |
138 |
cctcttattgaaataattcacatccttactagcaagat |
175 |
Q |
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| T |
2900408 |
cctcttattgaaataattcacatccttactaacaagat |
2900445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 14149455 - 14149501
Alignment:
| Q |
129 |
tcgatcaagcctcttattgaaataattcacatccttactagcaagat |
175 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||| |||||| |
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| T |
14149455 |
tcgatcaaccctcttcttgaaataattcacacccttactaacaagat |
14149501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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