View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_31 (Length: 217)
Name: NF18053_high_31
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 44829452 - 44829635
Alignment:
| Q |
17 |
ttctcatctctagagaatacattacatctttaaatttcgcaatcttttcagaggtaaacttaaatttcacatctattgtcataacaacaacttcacaaat |
116 |
Q |
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| T |
44829452 |
ttctcatctctagagaatacattacatctttaaatttcgcaatcttttcagaggtaaacttaaatttcacatctattgtcataacaacaacttcacaaat |
44829551 |
T |
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| Q |
117 |
ttcaatcaatataataataattcatacaaaaatcatagcaaactgaacatgttgcatcaatgtctaccgaccaccccttgaatc |
200 |
Q |
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| T |
44829552 |
ttcaatcaatataataataatttatacaaaaatcatagcaaactgaacatgttgcatcaatatctaccgaccaccccttgaatc |
44829635 |
T |
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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 48516923 - 48517100
Alignment:
| Q |
17 |
ttctcatctctagagaatacattacatctttaaatttcgcaatcttttcagaggtaaacttaaatttcacatctattgtcataacaacaacttcacaaat |
116 |
Q |
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||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| | || |||| |
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| T |
48516923 |
ttctcatctctggagaatacatcacatctttaaatttcttaatctttccagaggtaaacttaaatttcacaactattgtcataacaacaattccagaaat |
48517022 |
T |
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| Q |
117 |
ttcaatcaatataataataattcatacaaaaatcatagcaaactgaacatgttgcatcaatgtctaccgaccacccct |
194 |
Q |
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|||||||||||||||||| | | | ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
48517023 |
ttcaatcaatataataattcataaaataaaaatcatagcaaactgatcatgttgcatcaatgtctaccaaccacccct |
48517100 |
T |
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