View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_6 (Length: 569)
Name: NF18053_high_6
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 27160938 - 27161276
Alignment:
| Q |
11 |
caaaggtatttaaatggggtgcttcctattatgaaatttaaaatatttgcggcttcttctaacaaactttgtgctatgtttatcctcatcaa-gagactc |
109 |
Q |
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| T |
27160938 |
caaaggtatttaaatggggtgcttcctattatgaaatttaaaatatttgcggcttcttctaacaaactttgtgctatgtttatcct-atcaaagagactc |
27161036 |
T |
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| Q |
110 |
tcgtggaaattaactttcatc---cccgattgaacacaaaagatacaaatttttagaaaacctataaatagtcgtttttatgaccttgggtgtgcaaagt |
206 |
Q |
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| T |
27161037 |
tcgtggaaattaactttcatcatccccgatagaacacaaaagatataaatttttagaaaacctataaataatcgtttt-atgaccttgggtgtgcaaagt |
27161135 |
T |
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| Q |
207 |
ggtttcttactaatttattttctaaataacacaattttttcaaaggaatttcatccctagatataatctcatcgataaactaacatatttttatagtgta |
306 |
Q |
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| T |
27161136 |
ggtttcttattaatttattttttaaataacacaaatttttcaaaggaatttcatccctagatataatctcatcaataaaccaacatatttttgcagtgta |
27161235 |
T |
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| Q |
307 |
agtttgttggcaccaactaaatatagatgctcactcacatt |
347 |
Q |
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| T |
27161236 |
agttcgttggcaccaactaaatatagatgctcactcacatt |
27161276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 420 - 553
Target Start/End: Original strand, 27161341 - 27161473
Alignment:
| Q |
420 |
cacttttttcacttgtattttctttccttccactttcgcattttaaccaaacaaagtatatattcatcttcatttttcttccatgtcagacgttgggaaa |
519 |
Q |
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| T |
27161341 |
cacttttttcccttgtattttctttcgttccactttcgcattttaaccaaacaaagtatatattcatcttcatttttcttccatgtc-gacgttgggaaa |
27161439 |
T |
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| Q |
520 |
tggaatcataatcattcaccacctacctactatc |
553 |
Q |
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| T |
27161440 |
tggaatcataatcattcaccacctatctactatc |
27161473 |
T |
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