View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_high_8 (Length: 524)
Name: NF18053_high_8
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 44 - 488
Target Start/End: Original strand, 39385141 - 39385597
Alignment:
| Q |
44 |
gaaggcttagccgtgtgctaatgattaatgcagtggaggtctctttcagggcagcacataaagaagacaggtgtaaatctgcttcagttgcaatagttgt |
143 |
Q |
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| T |
39385141 |
gaaggcttagccgtgtgctaatgattaatgcagtggaggtctctttcagggcagcacataaagaagacaggtgtaaatctgcttcagttgcaatagttgt |
39385240 |
T |
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| Q |
144 |
ggccagccatacaaaacaagagatgaatgatgttattaatttaattagtacgaatcaaatcaatagctataataaactaaaacaatacagagaatattct |
243 |
Q |
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| T |
39385241 |
ggccagccat-caaaacaagagaagaatgatgttattaatttaattagtacgaatcaaatcaatagctataataaactaaaacaatacagagaatattct |
39385339 |
T |
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| Q |
244 |
tggtcaaagggaacaaa--------------------caatgcagcaatgcttgcttggtgtcattatttatatcaacatcaagcaatagcagaacgggg |
323 |
Q |
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| T |
39385340 |
tggtcaaagggaacaaataaatttgtaactttgatgccaatgcagcaattcttgcttggtgtcattatttatatcaacatcaagcaatagcagaacggg- |
39385438 |
T |
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| Q |
324 |
tgtgtgtattacatatgaagaaatggttaagaagaggagagagtttatcaaagatggtcaattaaattagtggttacatacnnnnnnntactactaccat |
423 |
Q |
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| T |
39385439 |
---gtgtattacatatgaagaaatggtt---aagaggagagagtttatcaaagatggtcaattaaattagtggttacatacaaaaaagtactactaccat |
39385532 |
T |
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| Q |
424 |
caatcatttgcgaagacaataacatgaagtccaattagagaaaaatgtgaatgaaacaacattta |
488 |
Q |
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| T |
39385533 |
caatcatttgcgaagacaataacatgaagtccaattcgagaaaaatgtgaatgaaataaccttta |
39385597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39384674 - 39384711
Alignment:
| Q |
1 |
ttagtgctagtaatggggatattgcttaatatagaaaa |
38 |
Q |
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| T |
39384674 |
ttagtgctagtaatggggacattgcttaatatataaaa |
39384711 |
T |
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