View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_1 (Length: 887)
Name: NF18053_low_1
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_1 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0415 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 847; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 16 - 887
Target Start/End: Complemental strand, 2831566 - 2830695
Alignment:
| Q |
16 |
caaattgtaaaggaaagcaaaagagggcaggatctcatgaaggaaatcattatcttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2831566 |
caaattgtaaaggaaagcaaaagagggcaggatctcatgaaggaaatcattatcttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtca |
2831467 |
T |
|
| Q |
116 |
ggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttggaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2831466 |
ggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttggaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaatt |
2831367 |
T |
|
| Q |
216 |
gaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgcaagaatcaaatgctgaattggttcttgccgtgcaggacctggaagag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2831366 |
gaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgcaagaatcaaatgctgaattggttcttgccgtgcaggacctggaagag |
2831267 |
T |
|
| Q |
316 |
atgttggagcagaaaaatatgaatatgtctaaacattccaatggacaggaacacaataaaaattcccaagagttagagatgaaactctcacaatgtgaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2831266 |
atgttggagcagaaaaatatgaatatgtctaaacattccaatggacaggaacacaataaaaattcccaagagttagagatgaaactctcacaatgtgaaa |
2831167 |
T |
|
| Q |
416 |
caagtgatgatgaagatcaaaaagcattggatgatcttgtcaaggagaaaagtgatgccaaggagacacacttgcttgagnnnnnnnttatagacttgta |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2831166 |
caagtgatgatgaagatcaaaaagcattggatgatcttgtcaaggagaaaagtgatgccaaggagacacacttgcttgagaaaaaaattatagacttgta |
2831067 |
T |
|
| Q |
516 |
tggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccacaag |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2831066 |
tggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccacaag |
2830967 |
T |
|
| Q |
616 |
cttgtacataagctagagcaaagccatctgcaggaacagttaaacatccaatatgagtgttcatctcctcctggtgctatgaatggcattgaaactcaca |
715 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2830966 |
cttgtacataagctagagcaaagccaactgcaggaacagttaaacatccaatatgagtgttcatctcctcctggtgctatgaatggcattgaaactcaca |
2830867 |
T |
|
| Q |
716 |
ttgagaatctggaaaaagaactcaaggaacagtcagaagatttctcaaattctctagctaccattaaggtactagaaacccatatcagaagattagagga |
815 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2830866 |
ttgagaatctggaaaaagaactcaaggaacagtcagaagatttctcaaattctctagctaccattaaggtactagaaacccatatcagaagattagagga |
2830767 |
T |
|
| Q |
816 |
ggaaatggagaaacaagtacaaggatttgaagctgatatagaagcaatggcacgtgaaaaagtcgagcaaga |
887 |
Q |
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| T |
2830766 |
ggaaatggagaaacaagtacaaggatttgaagctgatatagaagcaatggcacgtgaaaaagtcgagcaaga |
2830695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 3577 - 3895
Alignment:
| Q |
16 |
caaattgtaaaggaaagcaaaagagggcaggatctcatgaaggaaatcattatcttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtca |
115 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||| |||||| | || | ||||||||| ||||| || ||||||||| ||| ||||| || ||| |
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| T |
3577 |
caaatcgtaaaggaaagcaaaagagggcaggagctcgcaaaggaagttatcagcttgaaagaggaaagagatacactcaagatagagtgtgaaaacctca |
3676 |
T |
|
| Q |
116 |
ggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttggaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaatt |
215 |
Q |
| |
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||||| | |||||| | ||| || || |||||||| | ||| ||||| |||||| | || |||| |||| | || | |||||||||||||||||||| |
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| T |
3677 |
aatcttttcgcaaacgaagggatgaggctaaagtgagtagcagatcacaattggaaggcggggatcttcatactcttattgaagaaatcagacaagaatt |
3776 |
T |
|
| Q |
216 |
gaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgcaagaatcaaatgctgaattggttcttgccgtgcaggacctggaagag |
315 |
Q |
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|||| | ||||| |||| ||||||||||||| || |||||||||| |||| || ||||||||||||||| | |||||||| || |||||||| || | |
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| T |
3777 |
gaatcacgagaaggacatgaatgcaaatctcagactacagttaaataagacacaggaatcaaatgctgaactagttcttgctgttcaggacctcgacgca |
3876 |
T |
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| Q |
316 |
atgttggagcagaaaaata |
334 |
Q |
| |
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||||| ||||||||||||| |
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| T |
3877 |
atgttagagcagaaaaata |
3895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 514 - 851
Target Start/End: Original strand, 4071 - 4409
Alignment:
| Q |
514 |
tatggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccaca |
613 |
Q |
| |
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||||||||||| || ||||||||||| |||||||| |||||||||||||| || |||||| ||||||| |||||||| || || |||||||||||||| |
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| T |
4071 |
tatggtgaaatagagatgtataggagagacaaagatgagttagagatgcagatggagcagcttgcactggactatgaaattttgaaacaggaaaaccatg |
4170 |
T |
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| Q |
614 |
agcttgtacataagctagagcaaagccatctgcaggaacag-ttaaacatccaatatgagtgttcatctcctcctggtgctatgaatggcattgaaactc |
712 |
Q |
| |
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| ||| | ||||| | || || ||| | ||||| |||||| ||||| | |||||||| || || ||||||||| || ||| |||| | ||||||| | |
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| T |
4171 |
aatttgcatataagatggaacagagcgaactgcaagaacagcttaaaatttcaatatgaatgctcttctcctcctcctggtataaatgactttgaaacac |
4270 |
T |
|
| Q |
713 |
acattgagaatctggaaaaagaactcaaggaacagtcagaagatttctcaaattctctagctaccattaaggtactagaaacccatatcagaagattaga |
812 |
Q |
| |
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| || ||||||||||||| |||||||| |||| ||||| || |||||||||||||| ||||||||| || || || | ||| ||| | | ||||| |
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| T |
4271 |
atatccagaatctggaaaatcaactcaagaaacaatcagatgaattctcaaattctctggctaccattgagtctcttgagaaccaaatccgcaagttaga |
4370 |
T |
|
| Q |
813 |
ggaggaaatggagaaacaagtacaaggatttgaagctga |
851 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| |
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| T |
4371 |
ggaggaactggagaaacaaacccaaggatttgaagctga |
4409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 40798949 - 40799267
Alignment:
| Q |
16 |
caaattgtaaaggaaagcaaaagagggcaggatctcatgaaggaaatcattatcttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtca |
115 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||| |||||| | || | ||||||||| ||||| || ||||||||| ||| ||||| || ||| |
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| T |
40798949 |
caaatcgtaaaggaaagcaaaagagggcaggagctcgcaaaggaagttatcagcttgaaagaggaaagagatacactcaagatagagtgtgaaaacctca |
40799048 |
T |
|
| Q |
116 |
ggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttggaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaatt |
215 |
Q |
| |
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||||| | |||||| | ||| || || |||||||| | ||| ||||| |||||| | || |||| |||| | || | |||||||||||||||||||| |
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| T |
40799049 |
aatcttttcgcaaacgaagggatgaggctaaagtgagtagcagatcacaattggaaggcggggatcttcatactcttattgaagaaatcagacaagaatt |
40799148 |
T |
|
| Q |
216 |
gaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgcaagaatcaaatgctgaattggttcttgccgtgcaggacctggaagag |
315 |
Q |
| |
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|||| | ||||| |||| ||||||||||||| || |||||||||| |||| || ||||||||||||||| | |||||||| || |||||||| || | |
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| T |
40799149 |
gaatcacgagaaggacatgaatgcaaatctcagactacagttaaataagacacaggaatcaaatgctgaactagttcttgctgttcaggacctcgacgca |
40799248 |
T |
|
| Q |
316 |
atgttggagcagaaaaata |
334 |
Q |
| |
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||||| ||||||||||||| |
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| T |
40799249 |
atgttagagcagaaaaata |
40799267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 514 - 851
Target Start/End: Original strand, 40799441 - 40799778
Alignment:
| Q |
514 |
tatggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccaca |
613 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| |||||||||||||| || |||||| ||||||| |||||||| || || |||||||||||||| |
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| T |
40799441 |
tatggtgaaatagagatgtataggagagacaaagatgagttagagatgcagatggagcagcttgcactggactatgaaattttgaaacaggaaaaccatg |
40799540 |
T |
|
| Q |
614 |
agcttgtacataagctagagcaaagccatctgcaggaacagttaaacatccaatatgagtgttcatctcctcctggtgctatgaatggcattgaaactca |
713 |
Q |
| |
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| ||| | ||||| | || || ||| | ||||| |||||| | || | |||||||| || || ||||||||| || ||| |||| | ||||||| || |
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| T |
40799541 |
aatttgcatataagatggaacagagcgaactgcaagaacagcttaaatttcaatatgaatgctcttctcctcctcctggtataaatgactttgaaacaca |
40799640 |
T |
|
| Q |
714 |
cattgagaatctggaaaaagaactcaaggaacagtcagaagatttctcaaattctctagctaccattaaggtactagaaacccatatcagaagattagag |
813 |
Q |
| |
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|| ||||||||||||| |||||||| |||| ||||| || |||||||||||||| ||||||||| || || || | ||| ||| | | |||||| |
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| T |
40799641 |
tatccagaatctggaaaatcaactcaagaaacaatcagatgaattctcaaattctctggctaccattgagtctcttgagaaccaaatccgcaagttagag |
40799740 |
T |
|
| Q |
814 |
gaggaaatggagaaacaagtacaaggatttgaagctga |
851 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||| |
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| T |
40799741 |
gaggaactggagaaacaaacccaaggatttgaagctga |
40799778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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