View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_10 (Length: 469)
Name: NF18053_low_10
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 49541435 - 49541668
Alignment:
| Q |
31 |
ttatagttgaatttaattacatatatgagtgtcatgttagtgtcggacactgaacataagttcgattagaaacgttattaccaaacaaagtattgatata |
130 |
Q |
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| T |
49541435 |
ttatagttgaatttaattacatatatgagtgtcatgttagtgtcagacactggacacacgttcgattagaaacgttattaccaaacaaagtactgaaata |
49541534 |
T |
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| Q |
131 |
ccccaatgtctgatgagttgttgtttggttcnnnnnnnaattaaatttaagataatatgaagttattatttcatgagaaattcctagcaggcaataaaaa |
230 |
Q |
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| T |
49541535 |
ccacaatgtctgatgagttgttgtttggttctttttttaattaaatttaagataatatgaagttattatttcatgagaaattcctagcaggcaataaaaa |
49541634 |
T |
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| Q |
231 |
ttatgactattttgtaaaatgatagccataatca |
264 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49541635 |
ttatgactattttgtaaaatgatagccataatca |
49541668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 263 - 446
Target Start/End: Original strand, 49541708 - 49541894
Alignment:
| Q |
263 |
catagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtca |
359 |
Q |
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| T |
49541708 |
catagattggaatgattttaaatcatcaccctcactgctaacacaggatgagaatattttgggaactccatctgcagttctatccatatttttactgtca |
49541807 |
T |
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| Q |
360 |
ttgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaa |
446 |
Q |
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| T |
49541808 |
ttgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaa |
49541894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 264 - 450
Target Start/End: Original strand, 40917167 - 40917352
Alignment:
| Q |
264 |
atagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcat |
360 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
40917167 |
atagattggaatgattttaaatcatcaccctcgctgctaacacacgatgaggatattttgggaaccccatctgcacttctatccatatttttaccgtcat |
40917266 |
T |
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| Q |
361 |
tgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaatta |
450 |
Q |
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| T |
40917267 |
tgcgcactttttgagttgtggcaccatccttctggttattcttaacagca----gatgtcgttgatgggaccaaacacacccaaaaatta |
40917352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 264 - 450
Target Start/End: Original strand, 3150392 - 3150577
Alignment:
| Q |
264 |
atagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| |
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| T |
3150392 |
atagattggaatgattttaaatcatcaccctcactgttaacacacgatgaggatattttgggaaccccgtctgcacttctatccatatttttaccgtcat |
3150491 |
T |
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| Q |
361 |
tgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaatta |
450 |
Q |
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| T |
3150492 |
tgggcaacttttgagttgcggcaccatcgttctggttattcttaacagca----gatgtcgttgatgggaccaaacaaacccaaaaatta |
3150577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 2884174 - 2883989
Alignment:
| Q |
264 |
atagattggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcat |
360 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| |
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| T |
2884174 |
atagattggaatgattttaaatcatcaccctcgctgttaacacacgatgaggatattttgggaaccccgtctgcacttctatccatatttttaccgtcat |
2884075 |
T |
|
| Q |
361 |
tgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaatta |
450 |
Q |
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| T |
2884074 |
tgggcaacttttgagttgcggcaccatcgttctggttattcttaacagca----gatgtcgttgatgggaccaaacaaacccaaaaatta |
2883989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 268 - 453
Target Start/End: Complemental strand, 29251671 - 29251487
Alignment:
| Q |
268 |
attggaatgattttaaatcatcaccctcactgctaacacaggatga---tattttgggaaccccatctgcagttctatccatatttttactgtcattgtg |
364 |
Q |
| |
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|||| |||||||||| |||||||||||| | ||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||| |||| || |
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| T |
29251671 |
attgaaatgattttagatcatcaccctcgcagctaacacacgatgaggatattctgggaaccccatctgcacttctatccatatttttaccctcatcatg |
29251572 |
T |
|
| Q |
365 |
cagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaaattacct |
453 |
Q |
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| T |
29251571 |
tagattttgagttaggacacaatctttctgcttattcttaacagca----gatgtagttgatgggaccaagcgcacccaaaaattacct |
29251487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 446
Target Start/End: Complemental strand, 1086980 - 1086897
Alignment:
| Q |
359 |
attgtgcagcttttgagttgcggcaccatccttctggttattcttaacagcagatcgatgtcgttgatgggaccaaacgcacccaaaa |
446 |
Q |
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|||||| |||||||||||| ||||||||| ||||| |||||||||||| || ||||||||| |||||||||||| ||||||||| |
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| T |
1086980 |
attgtgtagcttttgagttatggcaccatcattctgcttattcttaacaaca----gatgtcgttaatgggaccaaacacacccaaaa |
1086897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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