View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18053_low_11 (Length: 441)

Name: NF18053_low_11
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18053_low_11
NF18053_low_11
[»] chr4 (14 HSPs)
chr4 (143-426)||(32004175-32004464)
chr4 (246-353)||(32001537-32001640)
chr4 (4-77)||(32004530-32004601)
chr4 (246-353)||(31942578-31942681)
chr4 (143-200)||(27924046-27924103)
chr4 (147-199)||(35803572-35803624)
chr4 (150-201)||(55292354-55292405)
chr4 (151-197)||(16467919-16467965)
chr4 (143-195)||(46737246-46737298)
chr4 (152-200)||(47769649-47769697)
chr4 (143-197)||(52708558-52708612)
chr4 (143-188)||(779742-779787)
chr4 (381-426)||(31942377-31942422)
chr4 (381-426)||(32001336-32001381)
[»] chr1 (7 HSPs)
chr1 (143-200)||(15646123-15646180)
chr1 (148-197)||(14321091-14321140)
chr1 (143-200)||(27858759-27858816)
chr1 (150-197)||(34767271-34767318)
chr1 (143-194)||(35838385-35838436)
chr1 (143-201)||(24084138-24084196)
chr1 (143-197)||(26663106-26663160)
[»] chr5 (5 HSPs)
chr5 (143-203)||(40197682-40197742)
chr5 (147-199)||(3247751-3247803)
chr5 (161-200)||(5775638-5775677)
chr5 (143-194)||(39074999-39075050)
chr5 (143-197)||(19886777-19886831)
[»] chr6 (4 HSPs)
chr6 (143-197)||(27133915-27133969)
chr6 (143-195)||(8307906-8307958)
chr6 (143-200)||(23898821-23898878)
chr6 (143-186)||(9062917-9062960)
[»] chr7 (4 HSPs)
chr7 (143-200)||(28749911-28749968)
chr7 (147-200)||(44592301-44592354)
chr7 (143-193)||(10980654-10980704)
chr7 (143-199)||(24613183-24613239)
[»] chr3 (3 HSPs)
chr3 (148-197)||(24924610-24924659)
chr3 (150-197)||(51672506-51672553)
chr3 (143-187)||(45745514-45745558)
[»] chr2 (4 HSPs)
chr2 (147-200)||(37985142-37985195)
chr2 (143-197)||(5963946-5964000)
chr2 (150-200)||(37807232-37807282)
chr2 (150-196)||(33839632-33839681)
[»] scaffold0024 (1 HSPs)
scaffold0024 (143-200)||(36236-36293)
[»] chr8 (3 HSPs)
chr8 (143-190)||(45120968-45121015)
chr8 (143-201)||(11517631-11517689)
chr8 (150-195)||(21575443-21575488)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 143 - 426
Target Start/End: Complemental strand, 32004464 - 32004175
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtgtttagggtttactagtgcccttagaacattggttagcatttc 242  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| | | | |||||||||||    
T  32004464 attccacttttccccaattttaaatgcataatttctatattaatcttcttaactagtttttaaggtttactagtgcccttaggatactagttagcatttc 32004365  T
Q  243 ccatattatcaaatccaccacatgatctaaatgcttccacatgtacagccgccataatatcattatcttgctgaaagttcaacagtgttattgttatcat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32004364 ccatattatcaaatccaccacatgatctaaatgcttccacatgtaatgccgccataatataattatcttgctgaaagttcaacagtgttattgttatcat 32004265  T
Q  343 gatcatgaccagcctcttaagcttagttaaacaggaagag------gaagcagggttgttcccgggaagttcaaagtggatgtaggagat 426  Q
    ||||||||||||| ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  32004264 gatcatgaccagcttcttaagcttagttaaacaggaagaggaagaggaagcagggttgttcccgggaagttcaaagtggatgtaggagat 32004175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 32001640 - 32001537
Alignment:
Q  246 tattatcaaatccaccacatgatctaaatgcttccacatgtacagccgccataatatcattatcttgctgaaagttcaac--agtgttattgttatcatg 343  Q
    |||||||||||||||| | || ||||||||||||||||      |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  32001640 tattatcaaatccaccgcttgctctaaatgcttccaca------gccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatg 32001547  T
Q  344 atcatgacca 353  Q
    | ||||||||    
T  32001546 accatgacca 32001537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 32004601 - 32004530
Alignment:
Q  4 aagaatatttgttgaaatagaaggtgtattaatattagggttttgctgtaactagtgtcctaaaggtaatagtt 77  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  32004601 aagaatatttgttgaaataggaggtgtattaatattagggttttgc--taactagtgtcctaagggtaatagtt 32004530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 31942681 - 31942578
Alignment:
Q  246 tattatcaaatccaccacatgatctaaatgcttccacatgtacagccgccataatatcattatcttgctgaaagttcaac--agtgttattgttatcatg 343  Q
    |||||||||| ||||| | || ||||||||||||||||      |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  31942681 tattatcaaaaccaccgcttgctctaaatgcttccaca------gccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatg 31942588  T
Q  344 atcatgacca 353  Q
    | ||||||||    
T  31942587 accatgacca 31942578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 27924046 - 27924103
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  27924046 attcaactttccaccaatttccaatgcataatttctatattaatcttcttaactagtg 27924103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 35803572 - 35803624
Alignment:
Q  147 cacttttcaccaattttcaatgcataatttctttattaatcttcttaactagt 199  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||||||||    
T  35803572 cactttttaccaattttcaatgcataatttctatattaaacttcttaactagt 35803624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 55292354 - 55292405
Alignment:
Q  150 ttttcaccaattttcaatgcataatttctttattaatcttcttaactagtgt 201  Q
    |||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  55292354 ttttcaccaatttttaatacataatttctatattaatcttcttaactagtgt 55292405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 16467919 - 16467965
Alignment:
Q  151 tttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  16467919 tttcatcaatttccaatgcataatttctatattaatcttcttaacta 16467965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 46737298 - 46737246
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaac 195  Q
    ||||||||||||| |||||| ||||||| ||||||| |||| |||||||||||    
T  46737298 attccacttttcatcaatttccaatgcagaatttctatatttatcttcttaac 46737246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 47769697 - 47769649
Alignment:
Q  152 ttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||||||||||||||| |||||||| | |||||||||| ||||||||||    
T  47769697 ttcaccaattttcaatacataatttttatattaatctttttaactagtg 47769649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 52708558 - 52708612
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    |||| ||||||||| ||||||||||| | ||||||| |||||| |||||||||||    
T  52708558 attcaacttttcactaattttcaatgtacaatttctatattaaccttcttaacta 52708612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 779787 - 779742
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatct 188  Q
    |||| |||||||||||||||  |||||||||||||| |||||||||    
T  779787 attcaacttttcaccaatttcaaatgcataatttctatattaatct 779742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 31942422 - 31942377
Alignment:
Q  381 aggaagcagggttgttcccgggaagttcaaagtggatgtaggagat 426  Q
    |||||||| ||||||||| || ||||||||||||||||| ||||||    
T  31942422 aggaagcaaggttgttccaggaaagttcaaagtggatgttggagat 31942377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 32001381 - 32001336
Alignment:
Q  381 aggaagcagggttgttcccgggaagttcaaagtggatgtaggagat 426  Q
    |||||||| ||||||||| || ||||||||||||||||| ||||||    
T  32001381 aggaagcaaggttgttccaggaaagttcaaagtggatgttggagat 32001336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 15646180 - 15646123
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  15646180 attccacttttcatcaattttcaatgcataatttctatattaatcttcttaactagtg 15646123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 14321091 - 14321140
Alignment:
Q  148 acttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  14321091 acttttcatcaattttcaatgcataatttctatattaatcttcttaacta 14321140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 27858759 - 27858816
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||| ||||||||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  27858759 attcaacttttcaccaattttcaacgcataatttttatattaatcttcttaattagtg 27858816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 34767318 - 34767271
Alignment:
Q  150 ttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  34767318 ttttcaccaattttcaaggcataatttttatattaatcttcttaacta 34767271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 35838385 - 35838436
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaa 194  Q
    |||| ||||||||||||||||||||||||||||| | |||| ||||||||||    
T  35838385 attctacttttcaccaattttcaatgcataatttttatatttatcttcttaa 35838436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 24084196 - 24084138
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtgt 201  Q
    ||||||||||| | ||||||||||| |||||||| | |||||||||| |||||||||||    
T  24084196 attccactttttatcaattttcaatacataatttttatattaatctttttaactagtgt 24084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 26663160 - 26663106
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    |||| |||||||| ||||||| |||||| || |||| ||||||||||||||||||    
T  26663160 attcaacttttcatcaatttttaatgcaaaaattctatattaatcttcttaacta 26663106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 40197682 - 40197742
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtgttt 203  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  40197682 attccacttttcactaatttccaatgcataatttctatattaatcttcttaactagtgttt 40197742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 3247751 - 3247803
Alignment:
Q  147 cacttttcaccaattttcaatgcataatttctttattaatcttcttaactagt 199  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  3247751 cacttttcaccaatttttaatgcataacttctatattaatcttcttaactagt 3247803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 5775638 - 5775677
Alignment:
Q  161 tttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5775638 tttcaatgcataatttctatattaatcttcttaactagtg 5775677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 39075050 - 39074999
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaa 194  Q
    ||||||| ||| | |||||||||||||||||||||| |||||||||||||||    
T  39075050 attccaccttttatcaattttcaatgcataatttctatattaatcttcttaa 39074999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 19886831 - 19886777
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    ||||||||||||| || || |||||||| ||||||| ||||||||| ||||||||    
T  19886831 attccacttttcatcatttctcaatgcaaaatttctgtattaatctccttaacta 19886777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 27133969 - 27133915
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  27133969 attccacttttcaccaattttcaatgcaaaattactatattaatcttcttaacta 27133915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 8307958 - 8307906
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaac 195  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  8307958 attccacttttcatcaatttccaatgcataatttctatattaatctccttaac 8307906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 23898821 - 23898878
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||||||||| || |||||| |||| |||||||||| | |||||||||||||||||||    
T  23898821 attccactttccatcaatttccaatacataatttctatgttaatcttcttaactagtg 23898878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 9062917 - 9062960
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaat 186  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||    
T  9062917 attcaacttttcaccaatttccaatgcataatttctatattaat 9062960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 28749968 - 28749911
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  28749968 attctacttttcatcaatttccaatgcataatttctatattaatcttcttaactagtg 28749911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 44592354 - 44592301
Alignment:
Q  147 cacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    ||||||||||||||||| |||||||||||| | ||| |||||| ||||||||||    
T  44592354 cacttttcaccaatttttaatgcataatttatatatcaatcttattaactagtg 44592301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 10980704 - 10980654
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttctta 193  Q
    |||| ||||||||| |||||||||| |||||||| | ||||||||||||||    
T  10980704 attctacttttcactaattttcaatacataatttatatattaatcttctta 10980654  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 24613239 - 24613183
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagt 199  Q
    |||| ||||||||| |||| |||||||| ||||||| ||||| | ||||||||||||    
T  24613239 attctacttttcactaattctcaatgcaaaatttctatattagttttcttaactagt 24613183  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 24924610 - 24924659
Alignment:
Q  148 acttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24924610 acttttcaccaatttttaatgcataatttctatattaatcttcttaacta 24924659  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 51672553 - 51672506
Alignment:
Q  150 ttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  51672553 ttttcaccaatttctaatgcataatttctatattaatcttcttaacta 51672506  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 45745558 - 45745514
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatc 187  Q
    |||||| |||| | |||||||||||||||||||||| ||||||||    
T  45745558 attccattttttatcaattttcaatgcataatttctatattaatc 45745514  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 37985195 - 37985142
Alignment:
Q  147 cacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  37985195 cacttttcaccaattttcaatgtataatttctatattaatcttattaactagtg 37985142  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 5964000 - 5963946
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaacta 197  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||| |||||||    
T  5964000 attccacttttcatcaattttcaatgcataatttttatattaatctttttaacta 5963946  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 37807282 - 37807232
Alignment:
Q  150 ttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  37807282 ttttcaccaatttgtaatgcataatttctatattaatcttcttaactagtg 37807232  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 33839632 - 33839681
Alignment:
Q  150 ttttcaccaattttcaatgcataattt---ctttattaatcttcttaact 196  Q
    |||||||||||||||||||||||||||   || |||||||||||||||||    
T  33839632 ttttcaccaattttcaatgcataatttctactatattaatcttcttaact 33839681  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 36293 - 36236
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtg 200  Q
    |||||| |||||||| |||| ||||||||||||||| || || |||||||||||||||    
T  36293 attccatttttcaccgatttccaatgcataatttctataatagtcttcttaactagtg 36236  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 45121015 - 45120968
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttc 190  Q
    ||||||||||||||||| || | ||||||||||||| |||||||||||    
T  45121015 attccacttttcaccaacttccgatgcataatttctatattaatcttc 45120968  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 11517631 - 11517689
Alignment:
Q  143 attccacttttcaccaattttcaatgcataatttctttattaatcttcttaactagtgt 201  Q
    |||| |||||| |||||||| ||||||||||||| | ||||||| ||||||| ||||||    
T  11517631 attctactttttaccaatttccaatgcataatttttatattaattttcttaattagtgt 11517689  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 21575488 - 21575443
Alignment:
Q  150 ttttcaccaattttcaatgcataatttctttattaatcttcttaac 195  Q
    |||| |||||||| ||||| ||||||||| ||||||||||||||||    
T  21575488 ttttaaccaatttccaatgtataatttctatattaatcttcttaac 21575443  T

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