View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18053_low_2 (Length: 852)
Name: NF18053_low_2
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 535 - 836
Target Start/End: Original strand, 41826803 - 41827109
Alignment:
| Q |
535 |
cttcaattagtactttagttagcatttttaagaaaagctacaagctataaaacgagttagttagtttaaacttttagctttttatatgttagtgagaaaa |
634 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41826803 |
cttcaagtagtactttagttagcatttctaagaaaagctacaagctataaaacgagttagttagtttaaacttttagctttttatatgttagtgagaaaa |
41826902 |
T |
|
| Q |
635 |
acttgttacgaagtatatttcattttatcaaacaagcttgtaagctagtatatgttaagcttaattgtgatactaaacatagccttactaacatcca--- |
731 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
41826903 |
gcttgttaccaagtatatttcattttatcaaacaagcttgtaagctagtatatgttaggcttacttgtgatactaaacatagccttactaacatccattt |
41827002 |
T |
|
| Q |
732 |
--cnnnnnnnnnatttcggataaaatcaatgtgtgtcatgttagtatatattagattcatttttaaaatgtgagacctccattgatatattactccaatc |
829 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41827003 |
ttttttttttttttttcggataaaatcaatgtgtgtcatgttagaatatattagattcatttttaaaatgtgagacctccattgatatattactccaata |
41827102 |
T |
|
| Q |
830 |
aaataat |
836 |
Q |
| |
|
||||||| |
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|
| T |
41827103 |
aaataat |
41827109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 332 - 495
Target Start/End: Original strand, 41826600 - 41826763
Alignment:
| Q |
332 |
gtacaatccatggttttcaaattcgccatagagtatgtttagtagaaatagactataagctagcttataattgatagctaaaaaactagtttataactaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
41826600 |
gtacaatccatggttttcaaattcgccatagagtatgtttggtagaaatagactataaactagcttataattgatagctaaaaatttagtttataactaa |
41826699 |
T |
|
| Q |
432 |
cgacttataattaaaaagttaggagttggtgggaacgtggctacattttcttgttagtgggtta |
495 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |
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| T |
41826700 |
tgacttataattaaaaagttaggagttggtgggaacgtgggtaaattttcttgttaatgggtta |
41826763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 41826493 - 41826551
Alignment:
| Q |
219 |
cttaaccttgttaaaatcttgcatgaggaaataatgtctagttccaaaattcttagtgc |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41826493 |
cttaaccttgttaaaatcttgcatgaggaaataatgtctagttccaaaattcctagtgc |
41826551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 641
Target Start/End: Original strand, 34459061 - 34459136
Alignment:
| Q |
565 |
agaaaagctacaagctataaaacgagttagttagtttaaacttttagctttttatatgttagtgagaaaaacttgtt |
641 |
Q |
| |
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| T |
34459061 |
agaaaagctataagctattaaacgaattagttagcttaaacttatagcttttt-tatgttagtgagaaaagcttgtt |
34459136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 41826461 - 41826496
Alignment:
| Q |
14 |
attattctattcaactgaacaaagagcatcaactta |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
41826461 |
attattctattcaactgaacaaagagcatcaactta |
41826496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 684
Target Start/End: Complemental strand, 41888577 - 41888472
Alignment:
| Q |
579 |
ctataaaacgagttagttagtttaaacttttagctttttatatgttagtgagaaaaacttgttacgaagtatatttcattttatcaaacaagcttgtaag |
678 |
Q |
| |
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|||||||| |||||| ||||| |||| || ||||||||||||| ||| ||| |||| ||| ||| || | || | |||| |||||||||||||||||| |
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| T |
41888577 |
ctataaaaggagttaattagtataaatttgtagctttttatatattattgaaaaaagcttattagcaaacacatcttatttcatcaaacaagcttgtaag |
41888478 |
T |
|
| Q |
679 |
ctagta |
684 |
Q |
| |
|
||||| |
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|
| T |
41888477 |
gtagta |
41888472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 13715602 - 13715780
Alignment:
| Q |
44 |
aacttatagcatgtttgccattgcgtttgacaaaccacgttctatggaaaaccacggtaatatatcacgtttagacaaaaactccaaatggtagcttaat |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||| ||||||||||||||||||| |
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| T |
13715602 |
aacttatagcatgtttgccattgcgtttgacaaaccacgttctatagaaaaccacggtaatgtatcgcgtttacacaaaagctccaaatggtagcttaat |
13715701 |
T |
|
| Q |
144 |
aaagtcacggcagatttgctttggtaaccacgccagccgtggttttggtattctaaactctatgtcaaacagatgctta |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| | ||||||| |
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| T |
13715702 |
aaagtcacggcagatttgctttggtaaccacgccagccatgcttttggtattctaaactctatgccaaaaacatgctta |
13715780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 11511145 - 11511301
Alignment:
| Q |
49 |
atagcatgtttgccattgcgtttgacaaaccacgttctatggaaaaccacggtaatatatcacgtttagacaaaaactccaaatggtagcttaataaagt |
148 |
Q |
| |
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||||| ||||||| ||||||||| |||||||| || ||||||||||||||| ||| ||||||||| ||||| ||||||||| |||||||||||| | |
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| T |
11511145 |
atagcctgtttgcttttgcgtttgtcaaaccacattttatggaaaaccacggcaatttatcacgttggcgcaaaagctccaaatgctagcttaataaaat |
11511244 |
T |
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| Q |
149 |
cacggcagatttgctttggtaaccacgccagccgtggttttggtattctaaactcta |
205 |
Q |
| |
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|||||||| ||||||||| ||| || |||||||||| ||||||| || ||||||||| |
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| T |
11511245 |
cacggcagttttgctttgataatcatgccagccgtgcttttggtgttgtaaactcta |
11511301 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 7068486 - 7068635
Alignment:
| Q |
57 |
tttgccattgcgtttgacaaaccacgttctatggaaaaccacggtaatatatcacgtttagacaaaaactccaaatggt-agcttaataaagtcacggca |
155 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||| |||||| |||||||| |||||||| |||||| ||| ||||| | |||||||||||||||| || |
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| T |
7068486 |
tttgctattgcgtttgtcaaaccacgttttatagaaaactacggtaattcatcacgttggcacaaaagctctaaatgttaagcttaataaagtcacaaca |
7068585 |
T |
|
| Q |
156 |
gatttgctttggtaaccacgccagccgtggttttggtattctaaactcta |
205 |
Q |
| |
|
| ||||||||| ||| ||| || ||||| ||||||| || ||||||||| |
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|
| T |
7068586 |
gttttgctttgataatcacatcaaccgtgcttttggtgttgtaaactcta |
7068635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 26353346 - 26353504
Alignment:
| Q |
50 |
tagcatgtttgccattgcgtttgacaaaccacgttctatggaaaaccacggtaatatatcacgtttagacaaaaactccaaatggtagcttaataaagtc |
149 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
26353346 |
tagcatgtttgtcattgcgtttgacaaaccacgttctatagaaaaccacggtaatatatcaggtttagacat-------------tagcttaataaagtc |
26353432 |
T |
|
| Q |
150 |
acggcagatttgctttggtaaccacgccagccgtggttttggtattctaaactctatgtcaaacagatgctt |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |
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|
| T |
26353433 |
acgacagatttgctttggtaaccacgccagccgtgcttttggtattctaaactctatgccaaacacatgctt |
26353504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 19138497 - 19138395
Alignment:
| Q |
64 |
ttgcgtttgacaaaccacgttctatggaaaaccacggtaatatatcacgtttagacaaaaactccaaatggtagcttaataaagtcacggcagatttgct |
163 |
Q |
| |
|
|||| |||| ||| ||||||| || |||||||||| | || |||||| || |||||| || |||||| |||||||||||| ||||||||| |||||| |
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| T |
19138497 |
ttgcatttgtcaatccacgttttaaggaaaaccactgcaacttatcacattggcacaaaagcttcaaatgctagcttaataaaatcacggcagttttgct |
19138398 |
T |
|
| Q |
164 |
ttg |
166 |
Q |
| |
|
||| |
|
|
| T |
19138397 |
ttg |
19138395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 54103359 - 54103189
Alignment:
| Q |
49 |
atagcatgtttgccattgcgtttgacaaaccacgttctatggaaaaccacggtaatatatcacgtttagacaaaaactccaaatggtagcttaataaagt |
148 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| |||||| |||| ||| ||||||||| ||||| |||||||||||||||||||||||| |
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| T |
54103359 |
atagcatgtttgccattgcgtttgtcaaaccacgttttatagaaaacaacggcaatgtatcacgttggcgcaaaagctccaaatggtagcttaataaagt |
54103260 |
T |
|
| Q |
149 |
cacggcagatttgctttggtaaccacgccagccgtggttttggtattctaaactctatgtcaaacagatgc |
219 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| ||||||| || |||||||||| |||||| |||| |
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|
| T |
54103259 |
cacggcagttttgctttgataaccacgtcagccgtgcttttggtgttgtaaactctataccaaacacatgc |
54103189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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