View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_20 (Length: 363)
Name: NF18053_low_20
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 10551952 - 10552249
Alignment:
| Q |
19 |
ctactaatattagtttcttgttttcatggcaaaaaggtacgtcgatgtacgactgtggctacca------------aacacgtactaagtaaactttggg |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
10551952 |
ctactaatattagtttcttgttttcacggcaaaaaggttagtcgatgtccgactgtggctaccaaacactcaaccaaacacgtactaagtaaactttggg |
10552051 |
T |
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| Q |
107 |
cctattgattcccaaatttcctccccttttggaagtacacatttgggggaaaaattgtgttgtccggatgcttgtttccggacaaaacagnnnnnnnnnn |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
10552052 |
cctattgattcccaaatttcctccccttttggaagtacacatttggggaaaaaattgtgttgtccggatgcttgtttccggacgaaacagttttttattt |
10552151 |
T |
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| Q |
207 |
nnnctcattctgcccggaacttattccacttcaaatagtttttaatcgtcccacgagtatatgaaccatgtgattatcgtgctcacctcgtacctttg |
304 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10552152 |
tttctcattctgcctggaacttattccacttcaaatagtttttaatcgtcccacgagtatatgaaccatgtgattatcgtgctcacctcgtacctttg |
10552249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 24582260 - 24582560
Alignment:
| Q |
18 |
actactaatattagtttcttgttttcatggcaaaaaggtacgtcgatgtacgactgtggctacca------------aacacgtactaagtaaactttgg |
105 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24582260 |
actactaatattagtttcttgttttcacggcaaaaaggtacgtcgatgtacgactgtggctaccaaacactcaaccaaacacgtactaagtaaactttgg |
24582359 |
T |
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| Q |
106 |
gcctattgattcccaaatttcctccccttttggaagtacacatttgggggaaaaattgtgttgtccggatgcttgtttccggacaaaacag--nnnnnnn |
203 |
Q |
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| T |
24582360 |
gcctattgattcccaaatttcctccccttttggaagtacacatttggcgaaaaaattgtgttgtccggatgcttgtttccggacaaaacagttttttttt |
24582459 |
T |
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| Q |
204 |
nnnnnnctcattctgcccggaacttattccacttcaaatagtttttaatcgtcccacgagtatatgaaccatgtgattatcgtgctcacctcgtaccttt |
303 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
24582460 |
ttttttttcattctacccggaacttattccacttcaaatagtttttaatcgtcccacgagtatatgaactaagtgattatcgtgctcacctcgtaccttt |
24582559 |
T |
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| Q |
304 |
g |
304 |
Q |
| |
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| T |
24582560 |
g |
24582560 |
T |
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