View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18053_low_21 (Length: 361)

Name: NF18053_low_21
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18053_low_21
NF18053_low_21
[»] chr5 (29 HSPs)
chr5 (257-350)||(30058425-30058518)
chr5 (257-350)||(30714843-30714936)
chr5 (257-323)||(30679043-30679109)
chr5 (4-106)||(30481915-30482021)
chr5 (4-106)||(29870769-29870875)
chr5 (4-102)||(30434409-30434511)
chr5 (257-327)||(30434070-30434138)
chr5 (4-106)||(30058880-30058977)
chr5 (4-106)||(30748226-30748332)
chr5 (4-106)||(30243786-30243894)
chr5 (4-98)||(29851892-29851988)
chr5 (257-327)||(30244163-30244233)
chr5 (4-50)||(30678647-30678693)
chr5 (105-166)||(29851735-29851796)
chr5 (4-71)||(17419305-17419373)
chr5 (110-166)||(29870646-29870702)
chr5 (52-106)||(30340004-30340059)
chr5 (4-49)||(30339939-30339984)
chr5 (4-37)||(30398670-30398703)
chr5 (169-202)||(30714756-30714789)
chr5 (110-166)||(30058757-30058813)
chr5 (118-166)||(30481792-30481840)
chr5 (172-201)||(29870580-29870609)
chr5 (169-202)||(30678954-30678987)
chr5 (258-302)||(29870506-29870550)
chr5 (174-202)||(30244072-30244100)
chr5 (174-202)||(30434201-30434229)
chr5 (52-101)||(30678707-30678758)
chr5 (47-106)||(30714546-30714606)
[»] chr4 (3 HSPs)
chr4 (4-41)||(20298161-20298198)
chr4 (110-171)||(20298317-20298378)
chr4 (172-201)||(20298405-20298434)
[»] chr7 (1 HSPs)
chr7 (4-37)||(26705919-26705952)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 30058518 - 30058425
Alignment:
Q  257 gtggagattgaattgaatggttaggatttcctttgacacacaagggcggggtcgacaaataaagggattaataggttcctaatgatgaagatga 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30058518 gtggagattgaattgaatggttaggatttcctttgacacacaagggtggggtcgacaaataaatggattaataggttcctaatgatgaagatga 30058425  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 30714843 - 30714936
Alignment:
Q  257 gtggagattgaattgaatggttaggatttcctttgacacacaagggcggggtcgacaaataaagggattaataggttcctaatgatgaagatga 350  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30714843 gtggagattgaactgaatggttaggatttcctttgacacacaagggtggggtcgacaaataaagggattaataggttcctaatgatgaagatga 30714936  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 30679043 - 30679109
Alignment:
Q  257 gtggagattgaattgaatggttaggatttcctttgacacacaagggcggggtcgacaaataaaggga 323  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30679043 gtggagattgaattgaatggttaggatttcctttgatacacaagggtggggtcgacaaataaaggga 30679109  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 30482021 - 30481915
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccct-atctgccacaatcaccatcgcaaaa 99  Q
    |||||||||||||||||||||||||||||||||| | ||||||   ||   |||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  30482021 gaggattgggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagcagagacgtttacccttatctgccacaatcaacatcgcaaaa 30481922  T
Q  100 atcaatt 106  Q
    |||||||    
T  30481921 atcaatt 30481915  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 29870875 - 29870769
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccct-atctgccacaatcaccatcgcaaaa 99  Q
    ||||||||||||||||||||||||||||||| || | ||||||   ||   |||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  29870875 gaggattgggacaagatagctcatattccaataatacagtttaccgaggattaagaagcagagacgtttacccttatctgccacaatcaacatcgcaaaa 29870776  T
Q  100 atcaatt 106  Q
    |||||||    
T  29870775 atcaatt 29870769  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 30434511 - 30434409
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccct-atctgccacaatcaccatcgcaaaa 99  Q
    ||||||||||||||||||||||||||||||| || |||||| |   |  | |||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  30434511 gaggattgggacaagatagctcatattccaagaatagagttgattgatgtttaagaagcagagacgtttacccttatctgcctcaatcaccatcgcaaaa 30434412  T
Q  100 atc 102  Q
    |||    
T  30434411 atc 30434409  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 30434138 - 30434070
Alignment:
Q  257 gtggagattgaattgaatggttaggatttcctttgacacacaagggcggggtcgacaaataaagggattaa 327  Q
    |||||||||||||||||||||||||||| |||||||  |||||||| |||||| |||||||||||||||||    
T  30434138 gtggagattgaattgaatggttaggattgcctttga--cacaagggtggggtccacaaataaagggattaa 30434070  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 30058977 - 30058880
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagtttaagttataagaaacagagacgtttaccct-atctgccacaatcaccatcgcaaaaatc 102  Q
    |||||||||||||||||| ||||||||||||||| | |||||      |||||| |||||||||||||||| ||||||| || | |||||||||||||||    
T  30058977 gaggattgggacaagatatctcatattccaaaaatacagttt------taagaagcagagacgtttacccttatctgcctcattaaccatcgcaaaaatc 30058884  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 30748332 - 30748226
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaa 99  Q
    |||||||||||||||||||||||||||||||||| |  |||||   ||   |||||| ||||||||||||||| |||||||| ||||||| |||||||||    
T  30748332 gaggattgggacaagatagctcatattccaaaaatactgtttacagaggattaagaagcagagacgtttacccttatctgcctcaatcacaatcgcaaaa 30748233  T
Q  100 atcaatt 106  Q
     ||||||    
T  30748232 ttcaatt 30748226  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 30243786 - 30243894
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagag---tttaagttataagaa--acagagacgtttaccc-tatctgccacaatcaccatcgcaa 97  Q
    ||||||||||||||||||||||||||||||||||||| |   ||| ||    |||||   ||||||||||||||| |||||||| |||||||||||||||    
T  30243786 gaggattgggacaagatagctcatattccaaaaagagtgattttttagaatgaagaagggcagagacgtttacccttatctgcctcaatcaccatcgcaa 30243885  T
Q  98 aaatcaatt 106  Q
    |||||||||    
T  30243886 aaatcaatt 30243894  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 29851988 - 29851892
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagtttaagttataagaaacagagacgtttaccc-tatct-gccacaatcaccatcgcaaa 98  Q
    |||||||||||||||||| ||||||||||||| | | ||||||| |  |||||| ||||||| ||||||| ||||| ||| ||||||||||||||||    
T  29851988 gaggattgggacaagatatctcatattccaaatatacagtttaactattaagaagcagagacatttacccttatctggcctcaatcaccatcgcaaa 29851892  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 30244163 - 30244233
Alignment:
Q  257 gtggagattgaattgaatggttaggatttcctttgacacacaagggcggggtcgacaaataaagggattaa 327  Q
    |||||||||||||||||||||||||||| | || |||||||| ||  |||||||||| ||||| |||||||    
T  30244163 gtggagattgaattgaatggttaggattgctttcgacacacagggatggggtcgacagataaatggattaa 30244233  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 30678647 - 30678693
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagtttaagtt 50  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  30678647 gaggattgggacaagatagctcatattccaaaaatacagtttaagtt 30678693  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 29851796 - 29851735
Alignment:
Q  105 ttatatattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 166  Q
    ||||||||| |||||||||||||||||| ||||||||||  || ||||||||||| ||||||    
T  29851796 ttatatattctcattgttgacttctttgtaacccattccgtaggaagagatccagggtacat 29851735  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 17419305 - 17419373
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagtttaagttataagaaac-agagacgtttac 71  Q
    |||||||||||||||||||||||||||||||||| | |||| ||||  |||||| | ||||||||||||    
T  17419305 gaggattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttac 17419373  T

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Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 29870702 - 29870646
Alignment:
Q  110 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 166  Q
    |||| ||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||    
T  29870702 tattctcattgtcgacatctttggaacccattccgcaggaagagatccagagtacat 29870646  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 30340004 - 30340059
Alignment:
Q  52 taagaaacagagacgtttaccct-atctgccacaatcaccatcgcaaaaatcaatt 106  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  30340004 taagaagcagagacgtttacccttatctgcctcaatcaccatcgcaaaattcaatt 30340059  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 30339939 - 30339984
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagagagtttaagt 49  Q
    |||||||||||||||||||||||||||||||| | | |||||||||    
T  30339939 gaggattgggacaagatagctcatattccaaatatacagtttaagt 30339984  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 30398703 - 30398670
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaa 37  Q
    ||||||||||||||||||||||||||||||||||    
T  30398703 gaggattgggacaagatagctcatattccaaaaa 30398670  T

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Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 30714756 - 30714789
Alignment:
Q  169 aattgttctaattcaggtaattttcttcatcata 202  Q
    ||||||||||||||||||||||||||||||||||    
T  30714756 aattgttctaattcaggtaattttcttcatcata 30714789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 30058813 - 30058757
Alignment:
Q  110 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 166  Q
    |||| ||||||| ||| ||||||||||||||||  ||| ||||||||||||||||||    
T  30058813 tattctcattgtcgacatctttggaacccattctgcaggaagagatccagagtacat 30058757  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 30481840 - 30481792
Alignment:
Q  118 ttgttgacttctttggaacccattcctcagaaagagatccagagtacat 166  Q
    |||||||||| ||||||||||||||| ||| |||||||||||| |||||    
T  30481840 ttgttgacttatttggaacccattccgcaggaagagatccagactacat 30481792  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 29870609 - 29870580
Alignment:
Q  172 tgttctaattcaggtaattttcttcatcat 201  Q
    ||||||||||||||||||||||||||||||    
T  29870609 tgttctaattcaggtaattttcttcatcat 29870580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 30678954 - 30678987
Alignment:
Q  169 aattgttctaattcaggtaattttcttcatcata 202  Q
    |||||||||||||| |||||||||||||||||||    
T  30678954 aattgttctaattctggtaattttcttcatcata 30678987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 29870550 - 29870506
Alignment:
Q  258 tggagattgaattgaatggttaggatttcctttgacacacaaggg 302  Q
    |||||||||| |||||||||||||||| ||||  |||||||||||    
T  29870550 tggagattgatttgaatggttaggattgccttcaacacacaaggg 29870506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 30244072 - 30244100
Alignment:
Q  174 ttctaattcaggtaattttcttcatcata 202  Q
    |||||||||||||||||||||||||||||    
T  30244072 ttctaattcaggtaattttcttcatcata 30244100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 30434229 - 30434201
Alignment:
Q  174 ttctaattcaggtaattttcttcatcata 202  Q
    |||||||||||||||||||||||||||||    
T  30434229 ttctaattcaggtaattttcttcatcata 30434201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 30678707 - 30678758
Alignment:
Q  52 taagaaacagagacgtttaccct--atctgccacaatcaccatcgcaaaaat 101  Q
    |||||| ||||||||||||||||  |||||||  ||||||||||||||||||    
T  30678707 taagaagcagagacgtttaccctttatctgccttaatcaccatcgcaaaaat 30678758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 30714546 - 30714606
Alignment:
Q  47 agttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaatt 106  Q
    ||||||||||| ||||||||||||||| |||||||| || |  ||||| ||||||||||||    
T  30714546 agttataagaagcagagacgtttacccttatctgcctcattagccatcacaaaaatcaatt 30714606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 20298161 - 20298198
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaagaga 41  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20298161 gaggattgggacaagatagctcatattccaaaaagaga 20298198  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 20298317 - 20298378
Alignment:
Q  110 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacataaaat 171  Q
    |||| ||| |||||||||||||||||||| |||   ||||||||||||||||||||| ||||    
T  20298317 tattctcaatgttgacttctttggaacccgttctgtagaaagagatccagagtacatgaaat 20298378  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 20298405 - 20298434
Alignment:
Q  172 tgttctaattcaggtaattttcttcatcat 201  Q
    ||||||||||||||||||||||||||||||    
T  20298405 tgttctaattcaggtaattttcttcatcat 20298434  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 26705952 - 26705919
Alignment:
Q  4 gaggattgggacaagatagctcatattccaaaaa 37  Q
    ||||||||||||||||||||||||||||||||||    
T  26705952 gaggattgggacaagatagctcatattccaaaaa 26705919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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