View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18053_low_23 (Length: 347)

Name: NF18053_low_23
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18053_low_23
NF18053_low_23
[»] chr6 (3 HSPs)
chr6 (146-228)||(10653232-10653314)
chr6 (15-82)||(10653101-10653167)
chr6 (280-325)||(10653366-10653411)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 10653232 - 10653314
Alignment:
Q  146 ttgacttagattaaatacatcatttttcaagacaaatttttaatgttatttcattaacagattaaatctccttagatctaccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10653232 ttgacttagattaaatacatcatttttcaagacaaatttttaatgttatttcattaacagattaaatctccttagatctaccc 10653314  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 10653101 - 10653167
Alignment:
Q  15 aaaacttgtggtaaacattttcatcgtaaaaatttgatgaattatactaacgaatgttctattgacac 82  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10653101 aaaacttgtggtaaacattttcatcgtaaaaatttgatg-attatactaacgaatgttctattgacac 10653167  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 10653366 - 10653411
Alignment:
Q  280 caatgggtatggtttacaccttcaccacttgtatattttctctttt 325  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10653366 caatgggtatggtttacaccttcaccacttgtatattttctttttt 10653411  T

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