View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18053_low_24 (Length: 332)
Name: NF18053_low_24
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_24 |
 | |
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| [»] scaffold1234 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 33867755 - 33868061
Alignment:
| Q |
15 |
caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867755 |
caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt |
33867854 |
T |
|
| Q |
115 |
gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867855 |
gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg |
33867954 |
T |
|
| Q |
215 |
aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867955 |
aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatgacgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc |
33868054 |
T |
|
| Q |
315 |
agttcat |
321 |
Q |
| |
|
||||||| |
|
|
| T |
33868055 |
agttcat |
33868061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 29266228 - 29266113
Alignment:
| Q |
203 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |
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|
| T |
29266228 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttgaaatgaaaaggtctggcacaatcaaacgaata |
29266129 |
T |
|
| Q |
303 |
agcaacaatttcagtt |
318 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
29266128 |
accaacaatttcagtt |
29266113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 5770294 - 5769988
Alignment:
| Q |
15 |
caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5770294 |
caggtatatgtataatttacatgataccatttaatttcttcaacacccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt |
5770195 |
T |
|
| Q |
115 |
gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg |
214 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5770194 |
gctattgatatatatggtactgtcaaaatatacaagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg |
5770095 |
T |
|
| Q |
215 |
aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5770094 |
aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttc |
5769995 |
T |
|
| Q |
315 |
agttcat |
321 |
Q |
| |
|
||||||| |
|
|
| T |
5769994 |
agttcat |
5769988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 24471437 - 24471550
Alignment:
| Q |
203 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgtttt-ggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaag |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
24471437 |
atgcaaggactgaatgtgcaggatcagaaaacctttgcaatgatgtttttggtgcatatgacgtcgttgaaatgaaaaattatggcacaatcaaacgaag |
24471536 |
T |
|
| Q |
302 |
aagcaacaatttca |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24471537 |
aagcaacaatttca |
24471550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1234 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 300 - 577
Alignment:
| Q |
15 |
caggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
300 |
caggtatatgtataatttacatgataccatttaatttcttcaacacccacatgttttagcattgtctttttatgtcacttgggctgcttaaattgtgttt |
399 |
T |
|
| Q |
115 |
gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg |
214 |
Q |
| |
|
| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
400 |
gcaattgatatatatggtattgtcaaaatatacaagagaaacaagaatttatgatactgcttttctaatatgaagttgagaatttatgatgcagggactg |
499 |
T |
|
| Q |
215 |
aatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaat |
292 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
500 |
aatgtgcaggattagaaaacctttgcaattatgttttggttcatatggcgtcgttaaaatgaaaaagtctggcacaat |
577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 21269194 - 21269312
Alignment:
| Q |
203 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
302 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21269194 |
atgcacggactaaatgtgcaggatcagaagatctttgcaatgatgttttggtgcatatggtgtcgttgaaatgaaaaagtctggcacaatcaaacgaaga |
21269293 |
T |
|
| Q |
303 |
agcaacaatttcagttcat |
321 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21269294 |
agcaacaatttcagttcat |
21269312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 21271208 - 21271326
Alignment:
| Q |
203 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
302 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21271208 |
atgcacggactaaatgtgcaggatcagaagatctttgcaatgatgttttggtgcatatggtgtcgttgaaatgaaaaagtctggcacaatcaaacgaaga |
21271307 |
T |
|
| Q |
303 |
agcaacaatttcagttcat |
321 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21271308 |
agcaacaatttcagttcat |
21271326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 25435297 - 25435414
Alignment:
| Q |
203 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
302 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
25435297 |
atgcagggactgtatgtgcaggatcagaaaacctttgcactgatgttttagtgcacatggcgtcgttgaaatgaaaaagtctggcacaatcaaacaaaga |
25435396 |
T |
|
| Q |
303 |
agcaacaatttcagttca |
320 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25435397 |
agcaacaatttcagttca |
25435414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 50828395 - 50828292
Alignment:
| Q |
217 |
tgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttcag |
316 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50828395 |
tgtgcaggatcggaaaacctttgcagtgatgttttagtgcatatggcgtcgttgaaatgaaaaagtctggtacaatcaaacaaagaagcaacaatttcag |
50828296 |
T |
|
| Q |
317 |
ttca |
320 |
Q |
| |
|
|||| |
|
|
| T |
50828295 |
ttca |
50828292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 50847458 - 50847561
Alignment:
| Q |
217 |
tgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttcag |
316 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50847458 |
tgtgcaggatcggaaaacctttgcagtgatgttttagtgcatatggcgtcgttgaaatgaaaaagtctggtacaatcaaacaaagaagcaacaatttcag |
50847557 |
T |
|
| Q |
317 |
ttca |
320 |
Q |
| |
|
|||| |
|
|
| T |
50847558 |
ttca |
50847561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 443035 - 443143
Alignment:
| Q |
203 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
302 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
443035 |
atgcagggactaaatgtgcag-atcagaagacctttgcaatgatgttttggtgcatatggtgtcgatgaaatgaaaaagtctggcacaatcaaactaaga |
443133 |
T |
|
| Q |
303 |
agcaacaatt |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
443134 |
agcaacaatt |
443143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 31449415 - 31449483
Alignment:
| Q |
112 |
tttgttattgatatatatggtactgtcaaaatatat--aagagaaacaagaatttatgatactgctttt |
178 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||||| || ||||| |||| |||||| |||||||||| |
|
|
| T |
31449415 |
tttgctatttatatatatggtactgtcaacatatatacaaaagaaataagattttatgctactgctttt |
31449483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 6522610 - 6522732
Alignment:
| Q |
63 |
acatgttttagcattgtctttttatgtcact-tgggctgctt-aaattgtgttt-gttattgatatatatggtactgtcaaaatatataagagaaacaag |
159 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| |||| |||| ||||||||||| | |||||||||| ||| ||||||||||||||| |||||||| ||| |
|
|
| T |
6522610 |
acatgttttaccattctctttttatgttactgtgggatgctacaaattgtgttttgctattgatatagatgctactgtcaaaatatacaagagaaataag |
6522709 |
T |
|
| Q |
160 |
aatttatgatactgcttttctaa |
182 |
Q |
| |
|
| ||||| ||||| | |||||| |
|
|
| T |
6522710 |
atattatgctactgttattctaa |
6522732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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