View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_27 (Length: 298)
Name: NF18053_low_27
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 36540442 - 36540153
Alignment:
| Q |
9 |
catcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacacttaggacattttggattggg |
108 |
Q |
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| T |
36540442 |
catcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacacttagggcattttggattggg |
36540343 |
T |
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| Q |
109 |
atcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcctcagcctcagaagacacacatgataag |
208 |
Q |
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| T |
36540342 |
atcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcttcagcctcagaagacacacatgataag |
36540243 |
T |
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| Q |
209 |
tctgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatgatgagtttatagaccgtcggttgaagtgtatcggc |
298 |
Q |
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| T |
36540242 |
tccgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatgatgagtttatagaccgtcggttgaagtgtatcggc |
36540153 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 18904069 - 18904119
Alignment:
| Q |
54 |
tgttaaggaaatcaagcaagacagtactcttacacttaggacattttggat |
104 |
Q |
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| T |
18904069 |
tgttaagaaaatcaagcaacacagtactcttgcacttgggacatttgggat |
18904119 |
T |
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