View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18053_low_28 (Length: 273)
Name: NF18053_low_28
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 14353842 - 14353600
Alignment:
| Q |
18 |
ccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcctaatttgggacgataaatcccatacttagacaaatcaccatatttta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14353842 |
ccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcccaatttaggacgataaatcccatacttagacaaatcaccatatttta |
14353743 |
T |
|
| Q |
118 |
gttttgcccatagagtaatgatagtatccacaacaccaaccggaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14353742 |
gttttgcccatagagtaatgatagtatccacaacaccaaccgaaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaa |
14353643 |
T |
|
| Q |
218 |
ctnnnnnnnnnnntttaaacaattaataccacaaaacatatatt |
261 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
14353642 |
ctaaaaaaaaaaa-ttaaacaattaataccacaaaacatatatt |
14353600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 43884043 - 43884243
Alignment:
| Q |
18 |
ccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcctaatttgggacgataaatcccatacttagacaaatcaccatatttta |
117 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||| ||||| || | |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
43884043 |
ccaaaatcaataactgcagattttcctatcacgttcttgagttgtaaaggtcccaatttgggacgataaatctcatacttggacaaatcaccatatttta |
43884142 |
T |
|
| Q |
118 |
gttttgcccatagagtaatgatagtatccacaacaccaaccggaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaa |
217 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
43884143 |
gttttgccga-aaagtaatgatagcatccacaacatcaaccggcaaataattcaccattcgcatcccttgacgaatcatttctctactgaagacatgaaa |
43884241 |
T |
|
| Q |
218 |
ct |
219 |
Q |
| |
|
|| |
|
|
| T |
43884242 |
ct |
43884243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 12381023 - 12380827
Alignment:
| Q |
18 |
ccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcctaatttgggacgataaatcccatacttagacaaatcaccatatttta |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||| || |||| |||||||| ||||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
12381023 |
ccaacatcaataacggcagactttcctgtaatatttttgagatgtaaaggtccctctttgggacgataaattccatatttagacagatcaccatatttta |
12380924 |
T |
|
| Q |
118 |
gttttgcccatagagtaatgatagtatccacaacaccaaccggaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatg |
214 |
Q |
| |
|
|||||||| | ||||||||| |||||||||| | |||||| ||||| |||||||| ||||| ||||||||||| ||||| ||| |||||||||| |
|
|
| T |
12380923 |
gttttgccaaaagagtaatgtatgtatccacaatatgaaccggcaaatacttcaccatacgcattccttggtgaatcatttccctagtgaagacatg |
12380827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University