View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_34 (Length: 238)
Name: NF18053_low_34
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6955468 - 6955695
Alignment:
| Q |
1 |
aatgacaacagcaggatattgcagatacggacaggccatacctgttggttttggaggtcgcgtggatatcgacactaaccttggcatccgtaaagctttc |
100 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6955468 |
aatgacaacagcaggatattgcagatacaggcaggccatacctgttggttttggaggtcgcttggatatcgacactaaccttggcatccgtaaagctttc |
6955567 |
T |
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| Q |
101 |
cttccacaggtataatatggttagtcgtttcgtgattcttcattttgaagagagttgaagttaaatgtgactaatacaaactcagttataattgcattga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6955568 |
cttccacaggtataatatggttggtcgtttcgtgattcttcattttgaagagagttgaagttaaatgtgactaatacaaactcagttataattgcattga |
6955667 |
T |
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| Q |
201 |
aacttcagagacatcgaaaacgttgatg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6955668 |
aacttcagagacatcgaaaacgttgatg |
6955695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 6965810 - 6965931
Alignment:
| Q |
1 |
aatgacaacagcaggatattgcagatacggacaggccatacctgttggttttggaggtcgcgtggatatcgacactaaccttggcatccgtaaagctttc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |
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| T |
6965810 |
aatgacaacagcaggagattgcagatataggcaggccatacctgttggttttggaggtcgcttggatatcgatactaactatggcatccgtaaagctttc |
6965909 |
T |
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| Q |
101 |
cttccacaggtataatatggtt |
122 |
Q |
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||||||| |||||||||||||| |
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| T |
6965910 |
cttccacgggtataatatggtt |
6965931 |
T |
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Back To:
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