View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_7 (Length: 539)
Name: NF18053_low_7
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 522
Target Start/End: Complemental strand, 27349154 - 27348649
Alignment:
| Q |
17 |
cataggatgaaggagcaatggatacagtgtgacaagtgctcagaatggagaaagttggaatctgtggagaatttatggggtcaaagaaggtaaacataaa |
116 |
Q |
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| T |
27349154 |
cataggatgaaggagcaatggatacagtgtgacaagtgctcagaatggagaaagttggaatctgtggagaatttatggggtcaaagaaggtaaacataaa |
27349055 |
T |
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| Q |
117 |
aagactttatatttctggtgcaatgcaattgttaaatcttgannnnnnn-gcaagtttttaagcttttggatgctgtcatcaggtgttcatgttctgctc |
215 |
Q |
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| T |
27349054 |
a-gactttatatttctggtgcaatgcaattgttaaatcttgattttttttgcaagtttttaagcttttggatgctgtcatcaggtgttcatgttctgctc |
27348956 |
T |
|
| Q |
216 |
ccatgaattgaacctaaggggaacttggataatcttttgaaaatgaaaaaggtattcatgatgttctttagtcgtagaagaaagttaataaatatcgttt |
315 |
Q |
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| T |
27348955 |
ccatgaattgaacctaaggggaacttggataatcttttgaaaatgaacaaggtattcatgatgttctttagtcgtagaagaaagttaataaatatcgttt |
27348856 |
T |
|
| Q |
316 |
tgaaaatctaaagtgacaaataatgtgaaacataaatatttcaattgttatgctgataatgagatatatgaatacttataactaagtgtatcatgaaaat |
415 |
Q |
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| T |
27348855 |
tgaaaatctaaagtgacaaataatgtgaaacataaatatttcaattgttataccgataatgagatatatgaatacttataacttagagtatcatgaaaat |
27348756 |
T |
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| Q |
416 |
tgataatattattttgattggtgtttttcagattctttgaaaccattaaaaagactttgatctatatgatatatgcaaagagctggtttttgatagaaga |
515 |
Q |
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| T |
27348755 |
tgataatattattttgattggtgtttttcagattctttgaaaccattaaaaagactttgatctatatgatatatgcaaagagctggtttttgatagaaga |
27348656 |
T |
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| Q |
516 |
cagtgat |
522 |
Q |
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| T |
27348655 |
cagtgat |
27348649 |
T |
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