View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18053_low_8 (Length: 534)
Name: NF18053_low_8
Description: NF18053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18053_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 26 - 496
Target Start/End: Original strand, 42416265 - 42416755
Alignment:
| Q |
26 |
gtagagagtccaattgcaattataatagttgaatgaagatcagacaattcatattttgaa---------------gtctgat----tcgcaattgcgtga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||| |
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| T |
42416265 |
gtagagagtccaattgcaattataatagttgaatgaagatcaaacaattcatattttgagttcaagatatgaaatgtctgatcttctcgcaattgcatga |
42416364 |
T |
|
| Q |
107 |
ttgtatacactccattaagtttaaaatattatgtttgtatgtgtctatatgtgcattcatgctaatgaaacttggtatttt-aaaaggactgagaagatt |
205 |
Q |
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||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |
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| T |
42416365 |
ttgtatacactccattagatctataatattatgtttgtatatgtctatatgtgcattcatgctaatgaaacttgatatttttaaaaggactgagaagact |
42416464 |
T |
|
| Q |
206 |
tgcatgaggggaaatgactctacaactccaaagcaatggaaacatgagaaaacatgtgggcgtccccttggtttaagatttgacaaagagaatggagatt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42416465 |
tgcatgaggggaaatgactctacaactccaaagcaatggaaacatgagaaaacatgtgggcgtccccttggtttaagatttgacaaagagagtggagatt |
42416564 |
T |
|
| Q |
306 |
tatacatagcagatgcatactatggtcttcttaaggttggaccaaatggaggactagctacaccattggcaacccatgttgaaggaaaacccattctttt |
405 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
42416565 |
tatacatagcagatgcatattatggtcttcttatggttggaccaaatggaggactagctacaccattggcaacccatgtcgaaggaaaacccattctctt |
42416664 |
T |
|
| Q |
406 |
tgcaaatgatcttgatattcacaagaacgggtccatcttcttcacagacacaagcacaagatacaatcgagtgtaatttcttctatttcta |
496 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42416665 |
tgcaaatgaccttgatattcacaagaatgggtccatcttcttcactgacacaagcacaagatacaatcgagtgtaatttcttctgtttcta |
42416755 |
T |
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