View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_10 (Length: 617)
Name: NF18054_high_10
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 608
Target Start/End: Original strand, 11364520 - 11365111
Alignment:
| Q |
17 |
atagagaaagtagaataagttccatgcatctaagggaataggtatagcttaatttctcatcttgtaaattgcatttgacatctattatccatgattccat |
116 |
Q |
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| T |
11364520 |
atagagaaagtagaataagttccatgcatctaagggaataggtatagcttaatttctcatcttgtaaattgcatttgacatctattatccatgattccat |
11364619 |
T |
|
| Q |
117 |
gtaatctttatgtgtataaatcaaacgnnnnnnnnnacaagtataaatcaaatgttctgatgggtgttaactcactcaagagcattcagaaaatgttttc |
216 |
Q |
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| T |
11364620 |
gtaatctttatgtgtataaatcaaacgtttttttttacaagtataaatcaaatgttctgatgggtgttaactcactcaagagcattcagaaaatgttttc |
11364719 |
T |
|
| Q |
217 |
tcttgctaattttcaccagtcttgtgattatatttgttgcgttcctatattgggagtttagaaatccatataatgttgtttgcatggtttgcagattttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11364720 |
tcttgctaattttcaccagtcttgtgattatatttgttgcgttcctatattgggagtttagaaatccatataatgttgtttgcatggtttgcagattttc |
11364819 |
T |
|
| Q |
317 |
cagaactataaagannnnnnngggaagatcttgtacttcaataaggatnnnnnnncgaatctaaaggtttctctgcctggattaatcagatgcttgtcac |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11364820 |
cagaactataaagatttttttgggaagatcttgtacttcaataaggatcaaaaaacgaatctaaaggtttctctgcctggattaatcagatgcttgtcac |
11364919 |
T |
|
| Q |
417 |
atcttgttaagaatgatgtagaaaatgatttgcttgacaaggtatatcttgtactctattaacatttaattttggtgagtttttgttacctgaaacaaca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11364920 |
atcttgttaagaatgatgtagaaaatgatttgcttgacaaggtatatcttgtactctattaacatttaattttggtgagtttttgttacctgaaacaaca |
11365019 |
T |
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| Q |
517 |
gtacattggtcattctttttaaactgctaaatatctttgcatcacataaacatattttacatcttagcattgtcatttcatttcccctttgc |
608 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11365020 |
gtagattggtcattctttttaaactgctgcatatctttgcatcacataaacatattttacatcttagcattgtcatttcatttcccctttgc |
11365111 |
T |
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