View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_high_12 (Length: 590)

Name: NF18054_high_12
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_high_12
NF18054_high_12
[»] chr4 (10 HSPs)
chr4 (17-576)||(5523543-5524112)
chr4 (456-573)||(21161334-21161450)
chr4 (421-573)||(9538917-9539068)
chr4 (433-573)||(19374302-19374440)
chr4 (427-559)||(19363379-19363510)
chr4 (427-573)||(32637441-32637585)
chr4 (427-465)||(2678107-2678145)
chr4 (427-465)||(15651571-15651609)
chr4 (427-465)||(15821786-15821824)
chr4 (427-465)||(26532708-26532746)
[»] chr8 (8 HSPs)
chr8 (393-573)||(37031430-37031610)
chr8 (414-576)||(8781066-8781226)
chr8 (437-564)||(14984176-14984303)
chr8 (432-573)||(18836302-18836442)
chr8 (427-465)||(2962094-2962132)
chr8 (427-465)||(6431917-6431955)
chr8 (427-465)||(22658679-22658717)
chr8 (433-465)||(35520763-35520795)
[»] chr7 (7 HSPs)
chr7 (405-573)||(25844691-25844859)
chr7 (414-560)||(19389522-19389670)
chr7 (414-582)||(12410465-12410633)
chr7 (427-465)||(12188785-12188823)
chr7 (448-573)||(24442595-24442719)
chr7 (427-465)||(28131627-28131665)
chr7 (427-465)||(47166034-47166072)
[»] chr6 (5 HSPs)
chr6 (424-573)||(10358251-10358400)
chr6 (414-470)||(390167-390223)
chr6 (427-473)||(21996870-21996916)
chr6 (428-465)||(8614003-8614040)
chr6 (428-465)||(33317955-33317992)
[»] chr2 (6 HSPs)
chr2 (452-576)||(37444112-37444236)
chr2 (437-576)||(15341250-15341389)
chr2 (432-473)||(24761927-24761968)
chr2 (427-465)||(24228395-24228433)
chr2 (427-465)||(24249202-24249240)
chr2 (432-473)||(19617493-19617534)
[»] chr3 (2 HSPs)
chr3 (428-477)||(4471873-4471922)
chr3 (438-474)||(26817358-26817394)
[»] chr5 (7 HSPs)
chr5 (489-573)||(28718948-28719032)
chr5 (519-573)||(31651054-31651108)
chr5 (427-465)||(32993-33031)
chr5 (427-465)||(7864610-7864648)
chr5 (427-465)||(39428514-39428552)
chr5 (428-465)||(9810910-9810947)
chr5 (428-465)||(12764166-12764203)
[»] scaffold0023 (1 HSPs)
scaffold0023 (427-474)||(108325-108372)
[»] scaffold1849 (1 HSPs)
scaffold1849 (427-465)||(207-245)
[»] scaffold0264 (1 HSPs)
scaffold0264 (427-465)||(2846-2884)
[»] scaffold0037 (1 HSPs)
scaffold0037 (428-465)||(38740-38777)
[»] chr1 (1 HSPs)
chr1 (60-101)||(33188181-33188222)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 17 - 576
Target Start/End: Original strand, 5523543 - 5524112
Alignment:
Q  17 aaaattgaccttaaaagttttgttgagtcaacaatcacgtttcaaaatattgttgtatctcaataaggaatgattggtaaaactgttactggttttaact 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5523543 aaaattgaccttaaaagttttgttgagtcaacaatcacttttcaaaatattgtt--atctcaataaggaatgattggtaaaactgttactggttttaact 5523640  T
Q  117 tatctaaaaaaccaaagttgtatgaaaacttatct------------aagaaa-gtcaatgacaaatcaaaataaacatattgcaacaaatatggacata 203  Q
    |||||||||| |||||||||||||||||||| | |            |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5523641 tatctaaaaagccaaagttgtatgaaaacttttttgtaccagaaagtaagaaaagtcaatgacaaatcaaaataaacatattgcaacaaatatggacata 5523740  T
Q  204 atgaaaatatttggtttcttagaaaaagaactcagatgagaaaaacagtagttactaaatttgaacatactcaaaagatctgagtaggattttccaaatt 303  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5523741 ttgaaaatatttggtttcttagaaaaagaactcagatgagaaaaacagtagttactaaatttgaacatactcagaagatctgagtaggattttccaaatt 5523840  T
Q  304 aaaaaggtaattttatttatgcgatagaattggttatgtttatattgggtgttttcttaacataaagaaagttaaaaagactaatcatgaagggaaaccg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5523841 aaaaaggtaattttatttatgcgatagaattggttatgtttatattgggtgttttcttaacataaagaaagttaaaaagactaatcatgaa-ggaaaccg 5523939  T
Q  404 atatcattataggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagca 503  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  5523940 atatcattataggccgcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagtgatagaattgttacctcttgaagta 5524039  T
Q  504 ctgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcctttg 576  Q
    | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  5524040 cagaaaagaattttgatcacagcaaagcaacatagtaaagtctctactcgtccacacgaaaggttctcctttg 5524112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 456 - 573
Target Start/End: Original strand, 21161334 - 21161450
Alignment:
Q  456 attacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtc 555  Q
    |||||||||||||||||||||| || ||||| ||||||||| ||||    ||||||| | |||||||||||||||||| | ||||||||||||||| |||    
T  21161334 attacgaatttgacatgatcagtgaaagaat-gttacctctcgaagtgtagaaaagagtcttgatcacagcaaagcaaaagagcaaagcctctacttgtc 21161432  T
Q  556 cacacgaacggttctcct 573  Q
    |||||||| |||||||||    
T  21161433 cacacgaatggttctcct 21161450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 573
Target Start/End: Complemental strand, 9539068 - 9538917
Alignment:
Q  421 gcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgat 520  Q
    ||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||  | || || |||||||||| |||  |  |||| | ||| |||    
T  9539068 gcaaaataaaaattttgattttctttttttggatcattacgaatttgacatgatcagtaaaag-atggttacctcttaaagtgcataaaacagtttcgat 9538970  T
Q  521 cacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    ||||||  | |||  |||||||||||||||||||||||||||| ||| |||||    
T  9538969 cacagctgatcaatctagcaaagcctctactcgtccacacgaatggtgctcct 9538917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 573
Target Start/End: Complemental strand, 19374440 - 19374302
Alignment:
Q  433 tttcgatttccttttcttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagc 531  Q
    |||||||||||||| ||||||||||||| ||||||||||||| || || ||| | |||||||||| ||||  |  ||||||||  ||||||||||||||     
T  19374440 tttcgatttcctttccttggatcattacaaatttgacatgatgagtgattagta-tgttacctctcgaagtgcataaaagaatcatgatcacagcaaag- 19374343  T
Q  532 aacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
     | | | || |||||||||||||||||||||||||| |||||    
T  19374342 -aaaaaacagagcctctactcgtccacacgaacggtgctcct 19374302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 559
Target Start/End: Complemental strand, 19363510 - 19363379
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagc 526  Q
    ||||| ||| ||||| ||||  ||||||||||||||||||||||| ||||| |||   | |||||||||| ||||| | || | |||| | ||||| | |    
T  19363510 taaaaattttgatttgctttctttggatcattacgaatttgacattatcagtgattcgaatgttacctctcgaagcgcagacaggaatctcgatcaaaac 19363411  T
Q  527 aaagcaacatagcaaagcctctactcgtccaca 559  Q
    ||||||| | ||||||| || ||||||||||||    
T  19363410 aaagcaa-aaagcaaagtctttactcgtccaca 19363379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 573
Target Start/End: Complemental strand, 32637585 - 32637441
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactgaaaagaattttgatcacag 525  Q
    ||||||||||||||| |||| ||||||| |||| ||||||||||||||||  || ||||| |||||||||| ||||  | || | |||| | |||||||     
T  32637585 taaaattttcgattttcttt-cttggattattatgaatttgacatgatcaatgattagaa-tgttacctctcgaagttcagacatgaatctcgatcacaa 32637488  T
Q  526 caaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    |||||||| | || | ||||| ||||||||||  |||||||| |||||    
T  32637487 caaagcaa-aaagtagagcctttactcgtccatgcgaacggtgctcct 32637441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 2678145 - 2678107
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2678145 taaaattttcgatttactttccttggatcattacgaatt 2678107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 15651571 - 15651609
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15651571 taaaattttcgattttctttccttggatcattacgaatt 15651609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 15821824 - 15821786
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15821824 taaaattttcgatttactttccttggatcattacgaatt 15821786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 26532746 - 26532708
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  26532746 taaaattttcgatttactttccttggatcattacgaatt 26532708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 393 - 573
Target Start/End: Original strand, 37031430 - 37031610
Alignment:
Q  393 aagggaaaccgatatcattataggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttac 492  Q
    |||| ||| ||| |||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  37031430 aaggtaaatcgagatcattataggcagcagaaattaaattttttgatttcctttccttggatcattacgaatttaacatgatcagtgatagaattgttac 37031529  T
Q  493 ctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    |||||||||  | ||||||||||| ||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||    
T  37031530 ctcttgaagtgcagaaaagaatttcgatcacatcaaagcaatagagcaaagcctctactcgtccacaagaacggttctcct 37031610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 414 - 576
Target Start/End: Original strand, 8781066 - 8781226
Alignment:
Q  414 aggcagcgcaaat-taaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaaga 512  Q
    |||||||| |||| ||||||||  |||||||||  |||  ||||||||||||||||||||||||| ||||||| | |||| |||| |||  | ||||||     
T  8781066 aggcagcgaaaatataaaattt--gatttccttcccttcaatcattacgaatttgacatgatcagtgatagaaattttacttctttaagtgcagaaaagg 8781163  T
Q  513 attttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcctttg 576  Q
    ||||||||| || |||||||||  || |||| ||||||||||||||||| ||||||||||||||    
T  8781164 attttgatctcatcaaagcaaccgagaaaagtctctactcgtccacacg-acggttctcctttg 8781226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 437 - 564
Target Start/End: Complemental strand, 14984303 - 14984176
Alignment:
Q  437 gatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacat 536  Q
    |||||||||| || ||||||||||||||||||||||||||  |||  || |||||||||||||||  |||||||| |||| ||||||| ||||||||  |    
T  14984303 gatttcctttcctaggatcattacgaatttgacatgatcaatgatgaaactgttacctcttgaagtgctgaaaaggatttcgatcacaacaaagcaatgt 14984204  T
Q  537 agcaaagcctctactcgtccacacgaac 564  Q
    ||||  | ||||||| ||||||||||||    
T  14984203 agcagtgtctctacttgtccacacgaac 14984176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 573
Target Start/End: Complemental strand, 18836442 - 18836302
Alignment:
Q  432 ttttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagc 531  Q
    ||||| |||| |||| |||||||||||| ||||||||||||||||| |||  || |||||||||| ||||  | || | |||| | ||||||| ||||||    
T  18836442 ttttcaattttctttccttggatcattatgaatttgacatgatcagtgattcaaatgttacctctcgaagtgcagacaggaatctcgatcacaacaaagc 18836343  T
Q  532 aacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    || | ||||  ||||||||| |||||| |||||||| |||||    
T  18836342 aa-aaagcagcgcctctactagtccactcgaacggtgctcct 18836302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 2962094 - 2962132
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2962094 taaaattttcgattttctttccttggatcattacgaatt 2962132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 6431955 - 6431917
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  6431955 taaaattttcgattttctttccttggatcattacgaatt 6431917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 22658679 - 22658717
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  22658679 taaaattttcgattttctttccttggatcattacgaatt 22658717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 465
Target Start/End: Original strand, 35520763 - 35520795
Alignment:
Q  433 tttcgatttccttttcttggatcattacgaatt 465  Q
    |||||||||||||| ||||||||||||||||||    
T  35520763 tttcgatttcctttccttggatcattacgaatt 35520795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 405 - 573
Target Start/End: Original strand, 25844691 - 25844859
Alignment:
Q  405 tatcattataggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcac 504  Q
    |||||||||||||| || |||||||| |||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |     
T  25844691 tatcattataggcaacggaaattaaattttttgatctcctttccttggatcattacgaatttgacatgatcagtgatagaattgttacctctcgaagtat 25844790  T
Q  505 tgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
     |||||| |||| ||||||| |||||||||||||||||||  |||||| |||||| |||| ||||||||    
T  25844791 agaaaaggatttcgatcacaacaaagcaacatagcaaagctactactcatccacatgaacagttctcct 25844859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 560
Target Start/End: Complemental strand, 19389670 - 19389522
Alignment:
Q  414 aggcagcgcaaattaaaatttt-cgatttccttttcttggatcattacgaatttgacatg-atcagcgatagaattgttacctcttgaagcactgaaaag 511  Q
    |||||||  ||||||||||||| ||||||  ||| ||| ||| ||||||||||||||||| ||||  |||  ||||||||||||||||||  | |||||     
T  19389670 aggcagcaaaaattaaaatttttcgattttgtttcctttgataattacgaatttgacatgaatcaatgatgaaattgttacctcttgaagtgcagaaaaa 19389571  T
Q  512 aattttgatcacagcaaagcaacatagcaaagcctctactcgtccacac 560  Q
      | | |||||||| ||||||||| ||||  ||||||||||||||||||    
T  19389570 gttctcgatcacagtaaagcaacagagcagtgcctctactcgtccacac 19389522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 582
Target Start/End: Complemental strand, 12410633 - 12410465
Alignment:
Q  414 aggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatga-tcagcgatagaattgttacctcttgaagcactgaaaaga 512  Q
    ||||| || |||||||||||||||||| ||||||||| || |||||| || ||||||||| ||||  ||  |||||| ||||||| |||    ||||||     
T  12410633 aggcaacggaaattaaaattttcgattcccttttctttgaacattacaaaattgacatgattcagttatgaaattgtcacctcttcaagtgaagaaaag- 12410535  T
Q  513 attttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcctttgcttctc 582  Q
    || | || |||| |||| |||| |||||  ||||||||| |||||||||||| | ||||||||| |||||    
T  12410534 atctcgaccacatcaaaacaacgtagcagtgcctctactggtccacacgaacagctctcctttggttctc 12410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 12188785 - 12188823
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  12188785 taaaattttcgatttactttccttggatcattacgaatt 12188823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 573
Target Start/End: Original strand, 24442595 - 24442719
Alignment:
Q  448 cttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcct 546  Q
    |||||||||||||||||||||||||||||  || ||||| ||| |||||| |||   | || |||||| | ||||||| |||||||| | |||| |||||    
T  24442595 cttggatcattacgaatttgacatgatcaatgattagaa-tgtcacctctcgaattgcagacaagaatctcgatcacaacaaagcaa-aaagcagagcct 24442692  T
Q  547 ctactcgtccacacgaacggttctcct 573  Q
    |||||| ||| || ||||||| |||||    
T  24442693 ctactcttcctcatgaacggtgctcct 24442719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 28131665 - 28131627
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  28131665 taaaattttcgattttctttccttggatcattacgaatt 28131627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 47166034 - 47166072
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  47166034 taaaattttcgattttctttccttggatcattacgaatt 47166072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 424 - 573
Target Start/End: Original strand, 10358251 - 10358400
Alignment:
Q  424 aattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcac 523  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||  | ||||| | ||| ||| ||    
T  10358251 aattaaaattttcgattttctttccttggatcattacgaattcgacatgaacagtgatagaaatgttacctcttgaagtgcagaaaacagtttcgattac 10358350  T
Q  524 agcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    |||  |||||| |||||||||||||||||||||||||||| |||||||||    
T  10358351 agctgagcaacgtagcaaagcctctactcgtccacacgaatggttctcct 10358400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 390223 - 390167
Alignment:
Q  414 aggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgaca 470  Q
    |||||| ||||||||||||||| ||||||||||  ||| |||||||||| |||||||    
T  390223 aggcagtgcaaattaaaatttttgatttcctttctttgaatcattacgattttgaca 390167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 473
Target Start/End: Complemental strand, 21996916 - 21996870
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatttgacatga 473  Q
    ||||||||||||||| | || |||||||||||| |||||||||||||    
T  21996916 taaaattttcgattttcattccttggatcattatgaatttgacatga 21996870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 8614040 - 8614003
Alignment:
Q  428 aaaattttcgatttccttttcttggatcattacgaatt 465  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  8614040 aaaattttcgattttctttccttggatcattacgaatt 8614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 33317992 - 33317955
Alignment:
Q  428 aaaattttcgatttccttttcttggatcattacgaatt 465  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  33317992 aaaattttcgattttctttccttggatcattacgaatt 33317955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 37444236 - 37444112
Alignment:
Q  452 gatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacat-agcaaagcctctac 550  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||||||  | ||||||| | | ||||||| ||||| || |  ||||||||||||||    
T  37444236 gatcattacgaatttgacatgatcaatgataga-ttgttacctcttgaagtgcagaaaagattctcgatcacaacaaagtaaaaagagcaaagcctctac 37444138  T
Q  551 tcgtccacacgaacggttctcctttg 576  Q
    ||||||||||||||||| ||||||||    
T  37444137 tcgtccacacgaacggtgctcctttg 37444112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 576
Target Start/End: Original strand, 15341250 - 15341389
Alignment:
Q  437 gatttccttttcttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactg-aaaagaattttgatcacagcaaagcaac 534  Q
    ||||||| || |||||||||||||||||||||||||||||| || ||| | ||||| |||| ||||  | | ||||| || |||||| |||||||| ||     
T  15341250 gatttcccttccttggatcattacgaatttgacatgatcagtgattagta-tgttaactctcgaagtgcagaaaaaggatcttgatcgcagcaaag-aaa 15341347  T
Q  535 atagcaaagcctctactcgtccacacgaacggttctcctttg 576  Q
    | |  | |||||||||||||||||||||||||| ||||||||    
T  15341348 aaattagagcctctactcgtccacacgaacggtgctcctttg 15341389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 24761927 - 24761968
Alignment:
Q  432 ttttcgatttccttttcttggatcattacgaatttgacatga 473  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  24761927 ttttcgattttctttccttggatcattacgaatttgacatga 24761968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 24228395 - 24228433
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  24228395 taaaattttcgattttctttccttggatcattacgaatt 24228433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 24249202 - 24249240
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  24249202 taaaattttcgatttactttccttggatcattacgaatt 24249240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 19617534 - 19617493
Alignment:
Q  432 ttttcgatttccttttcttggatcattacgaatttgacatga 473  Q
    |||| ||||| |||| ||||||||||||||||||||||||||    
T  19617534 tttttgattttctttccttggatcattacgaatttgacatga 19617493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 4471922 - 4471873
Alignment:
Q  428 aaaattttcgatttccttttcttggatcattacgaatttgacatgatcag 477  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  4471922 aaaaatttcgatttcctttccttggatcattacgaatttgacatgatcag 4471873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 26817394 - 26817358
Alignment:
Q  438 atttccttttcttggatcattacgaatttgacatgat 474  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26817394 atttcctttccttggatcattacgaatttgacatgat 26817358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 573
Target Start/End: Original strand, 28718948 - 28719032
Alignment:
Q  489 ttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    ||||||||||||||   ||||| | ||| ||||| |||  |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  28718948 ttacctcttgaagcgaagaaaatagtttcgatcatagctgagcaacgtagaaaagcctttactcgtccacacgaacggttctcct 28719032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 31651054 - 31651108
Alignment:
Q  519 atcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 573  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||| | ||||||    
T  31651054 atcacagcaaaacaacataacaatgcctctactcgtccacacgaacagatctcct 31651108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 33031 - 32993
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  33031 taaaattttcgatttactttccttggatcattacgaatt 32993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 7864610 - 7864648
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  7864610 taaaattttcgattttctttccttggatcattacgaatt 7864648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 39428552 - 39428514
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  39428552 taaaattttcgattttctttccttggatcattacgaatt 39428514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 9810910 - 9810947
Alignment:
Q  428 aaaattttcgatttccttttcttggatcattacgaatt 465  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9810910 aaaattttcgattttctttccttggatcattacgaatt 9810947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 12764166 - 12764203
Alignment:
Q  428 aaaattttcgatttccttttcttggatcattacgaatt 465  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  12764166 aaaattttcgattttctttccttggatcattacgaatt 12764203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 108325 - 108372
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatttgacatgat 474  Q
    ||||| ||||||||||||||  ||||||||||| ||||||||||||||    
T  108325 taaaaatttcgatttcctttcattggatcattatgaatttgacatgat 108372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1849 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1849
Description:

Target: scaffold1849; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 245 - 207
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  245 taaaattttcgatttactttccttggatcattacgaatt 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 2846 - 2884
Alignment:
Q  427 taaaattttcgatttccttttcttggatcattacgaatt 465  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2846 taaaattttcgatttactttccttggatcattacgaatt 2884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 38740 - 38777
Alignment:
Q  428 aaaattttcgatttccttttcttggatcattacgaatt 465  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  38740 aaaattttcgattttctttccttggatcattacgaatt 38777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 33188222 - 33188181
Alignment:
Q  60 aaaatattgttgtatctcaataaggaatgattggtaaaactg 101  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  33188222 aaaatattgttgtatctcaatcaggaatgattaataaaactg 33188181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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