View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_13 (Length: 552)
Name: NF18054_high_13
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Original strand, 10223725 - 10224247
Alignment:
| Q |
13 |
cagacaccacttcaacaacctctcctccttccaaccaccaacctcaccttcttcgtttacccctccgtcgtaaccccaaacccaaaaacctctctctcat |
112 |
Q |
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| T |
10223725 |
cagacaccacttcaacaacctctcctccttccaaccaccaacctcaccttcttcgtttacccctccgtcgtaaccccaaacccaaaaacctctctctcat |
10223824 |
T |
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| Q |
113 |
tcacccttcttcacaacctattacccctccaaagaagagcaagcgaagaagaaaatgtgattcaacttcacacatcttacccttaatggatgctcttcac |
212 |
Q |
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| T |
10223825 |
tcacccttcttcacaacctattactcctccaaagaagagcaagcgaagaagaaaatgtgatacaacttcacacatcttacccttaatggatgctcttcac |
10223924 |
T |
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| Q |
213 |
tttcccataaccattgatatttacacctcattggtcaaagaatgtactctttccaccgacccagaaactgctattgagttgcatacacaaatcataacta |
312 |
Q |
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| T |
10223925 |
tttcccataaccattgatatttacacctcattggtcaaagaatgtactctttccaccgacccagaaactgctattgagttgcatacacaaatcataacta |
10224024 |
T |
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| Q |
313 |
gaggcatcgaactgccattgacattgctcaatcggattctgattatgtttgtttcatgcggtttattggagaatgcacgccgtgtgtttgatgtaatgtc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10224025 |
gaggcatcgaactgccattgacattgctcaatcggattctgattatgtttgtttcatgcggtttattggagaatgcacgccgagtgtttgatgtaatgtc |
10224124 |
T |
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| Q |
413 |
tgtgagggattttcattcttgggctaccttgtttgttgcttattatgaaaatggtgagtatgagaatgctatagatgtttttgttagtatgttatgtcaa |
512 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10224125 |
tgtgagggattttcattcttgggctaccttgtttgtttcttattatgaaaatggtgagtatgagaatgctatagatgtttttgttagtatgttatgtcaa |
10224224 |
T |
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| Q |
513 |
ttggatgtgatggggttttcttt |
535 |
Q |
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| T |
10224225 |
ttggatgtgatggggttttcttt |
10224247 |
T |
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