View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_14 (Length: 551)
Name: NF18054_high_14
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 534
Target Start/End: Complemental strand, 34755354 - 34754831
Alignment:
| Q |
11 |
catagggggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcaggatgagaccatggacatcaaaattaccaaggaacaaatcaagggt |
110 |
Q |
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| T |
34755354 |
catagagggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcaggatgagaccatggacatcaaaattaccaaggaacaaatcaagggt |
34755255 |
T |
|
| Q |
111 |
cttgttgtggtaagtttattctaattgtctttgtttcttatcttctaattatatgctaattaatttaaatttcatcaatcaatagtgttaagtatttatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34755254 |
cttgttgtggtaagtttattctaattgtctttgtttcttatcttctaattatatgctaattaatttaaatttcatcgatcaatagtgttaagtatttatt |
34755155 |
T |
|
| Q |
211 |
gaggagatgttattgaactaagacttttaactttataccactatggcacttttgaatatggtttggtaagttatgtgtatgtactatgaagtaaacatgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755154 |
gaggagatgttattgaactaagacttttaactttataccactatggcacttttgaatatggtttggtaagttatgtgtatgtactatgaagtaaacatgc |
34755055 |
T |
|
| Q |
311 |
aattttacatctcttgcaatgctcttacattcagaacgctttgtgtatgcaggatttcttctctgcggggacagattccacggctgtgtcaactgaatgg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755054 |
aattttacatctcttgcaatgctcttacattcagaacgctttgtgtatgcaggatttcttctctgcggggacagattccacggctgtgtcaactgaatgg |
34754955 |
T |
|
| Q |
411 |
actttatcagagctcatcaacaatcctagagtattgaagaaggctcgagaagagattgactctgttgtgggaaaagatagactagttgatgaatcagatg |
510 |
Q |
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| T |
34754954 |
actttatcagagctcatcaacaatcctagagtattgaagaaggctcgagaagagattgactctgttgtgggaaaagatggactagttgatgaatcagatg |
34754855 |
T |
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| Q |
511 |
ttcagaatcttccttacattagag |
534 |
Q |
| |
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| T |
34754854 |
ttcagaatcttccttacattagag |
34754831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 350 - 531
Target Start/End: Original strand, 34781194 - 34781375
Alignment:
| Q |
350 |
tttgtgtatgcaggatttcttctctgcggggacagattccacggctgtgtcaactgaatggactttatcagagctcatcaacaatcctagagtattgaag |
449 |
Q |
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|||| ||||||||||||| |||||||| || ||||| ||||| || ||||| || |||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
34781194 |
tttgggtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaataatcctagagtgttgaag |
34781293 |
T |
|
| Q |
450 |
aaggctcgagaagagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacatta |
531 |
Q |
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| T |
34781294 |
aaagctcgagaggagattgactctgttgtgggaaaagatagactggttgatgaatcagatgttcagaatcttccttacatta |
34781375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 358 - 530
Target Start/End: Complemental strand, 34762992 - 34762820
Alignment:
| Q |
358 |
tgcaggatttcttctctgcggggacagattccacggctgtgtcaactgaatggactttatcagagctcatcaacaatcctagagtattgaagaaggctcg |
457 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||| ||||||| |||||| || | |
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| T |
34762992 |
tgcaggatttcttctctgcagggacagattccacagctgtggcaacagaatggactttggcagagctcatcaacaatccaagagtatggaagaaagcaca |
34762893 |
T |
|
| Q |
458 |
agaagagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacatt |
530 |
Q |
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| T |
34762892 |
agaagagattgactctgttgtgggaaaagatagactagttgacgaatcagatgttcagaatcttccatacatt |
34762820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 34780789 - 34780977
Alignment:
| Q |
18 |
ggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcaggatgagaccatggacatcaaaattaccaaggaacaaatcaagggtcttgttg |
117 |
Q |
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|||||||||| ||| ||||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
34780789 |
ggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggaacaaatcaagggtcttgttg |
34780888 |
T |
|
| Q |
118 |
tggtaagtttattctaattgtctttgtttcttatcttctaattatatgctaattaatttaaatttcatcaatcaatagtgttaagtatt |
206 |
Q |
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|||||||||| |||| ||||||||||||||||||||| ||| || || |||||||||||||||| ||| |||||| |||||||||||| |
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| T |
34780889 |
tggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcaacggtgttaagtatt |
34780977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 34763323 - 34763214
Alignment:
| Q |
18 |
ggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcaggatgagaccatggacatcaaaattaccaaggaacaaatcaagggtcttgttg |
117 |
Q |
| |
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|||||||||| ||| ||||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
34763323 |
ggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggaacaaatcaagggtcttgttg |
34763224 |
T |
|
| Q |
118 |
tggtaagttt |
127 |
Q |
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|||| ||||| |
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| T |
34763223 |
tggtgagttt |
34763214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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