View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_high_2 (Length: 828)
Name: NF18054_high_2
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 770; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 18 - 823
Target Start/End: Complemental strand, 10255515 - 10254710
Alignment:
| Q |
18 |
atgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10255515 |
atgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaa |
10255416 |
T |
|
| Q |
118 |
ccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255415 |
ccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtc |
10255316 |
T |
|
| Q |
218 |
gccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10255315 |
gccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatt |
10255216 |
T |
|
| Q |
318 |
tcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255215 |
tcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtc |
10255116 |
T |
|
| Q |
418 |
cagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255115 |
cagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttc |
10255016 |
T |
|
| Q |
518 |
gttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaag |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10255015 |
gttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaag |
10254916 |
T |
|
| Q |
618 |
aggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacatt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| |||| || |||| |
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|
| T |
10254915 |
aggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcatt |
10254816 |
T |
|
| Q |
718 |
gtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgat |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10254815 |
gtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgat |
10254716 |
T |
|
| Q |
818 |
gatgtc |
823 |
Q |
| |
|
|||||| |
|
|
| T |
10254715 |
gatgtc |
10254710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 22 - 823
Target Start/End: Original strand, 10230314 - 10231115
Alignment:
| Q |
22 |
caagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccgg |
121 |
Q |
| |
|
|||||||||||||| ||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| || || |
|
|
| T |
10230314 |
caagaggattcatttcaagctgtatatcagcgaacacagcatattttttagtaatggcgaaatcatgaagaaacgaaggtcttttcatggagaatactgg |
10230413 |
T |
|
| Q |
122 |
aacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccg |
221 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||| | || ||||| ||||||||||| ||| ||||| |||||| | |
|
|
| T |
10230414 |
aacgtcgttatgtttaacaccattcgaatcaaaacggaaataggttaaaaaaggtcgaatgggaccataacggaaagcgaaacattcacttgtgtcagag |
10230513 |
T |
|
| Q |
222 |
tcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcat |
321 |
Q |
| |
|
|| ||||| ||||| || ||||||||||| ||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| || || |||| ||||| |
|
|
| T |
10230514 |
tctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagtttgacttcat |
10230613 |
T |
|
| Q |
322 |
aaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccaga |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | || |||||||||||||| || || || || || | |
|
|
| T |
10230614 |
aaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttatactgaccggt |
10230713 |
T |
|
| Q |
422 |
tatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttt |
521 |
Q |
| |
|
|| || |||||| | || || |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10230714 |
taacacccgtgctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttgttt |
10230813 |
T |
|
| Q |
522 |
tcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggt |
621 |
Q |
| |
|
|| |||||||| ||||| |||| || ||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
10230814 |
tcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagat |
10230913 |
T |
|
| Q |
622 |
ggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgt |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10230914 |
ggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgt |
10231013 |
T |
|
| Q |
722 |
tggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatg |
821 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10231014 |
tggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatg |
10231113 |
T |
|
| Q |
822 |
tc |
823 |
Q |
| |
|
|| |
|
|
| T |
10231114 |
tc |
10231115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 823
Target Start/End: Original strand, 10239090 - 10239895
Alignment:
| Q |
18 |
atgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaa |
117 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||| | |||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10239090 |
atgtcaagaggattaatttcaagctgtatatcagcgaacaaagcgtatttttttgtaattgcgaaatcatgaagaaaagaaggtcttttcatggagaaaa |
10239189 |
T |
|
| Q |
118 |
ccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtc |
217 |
Q |
| |
|
| |||||||| || |||||||| ||||||| |||||||||||||||||||||||| ||| | || ||||||| ||| |||| ||| |||||||||||| |
|
|
| T |
10239190 |
ctggaacgtcattgtgtttaactccatttgaatcaaaacggaaataggttaaaaaaggtcgaatgagaccgtagcggtaagcgaaacattcacctgtgtc |
10239289 |
T |
|
| Q |
218 |
gccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatt |
317 |
Q |
| |
|
| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10239290 |
ggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgtaactttgatt |
10239389 |
T |
|
| Q |
318 |
tcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||| ||||| || || | |
|
|
| T |
10239390 |
tcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgac |
10239489 |
T |
|
| Q |
418 |
cagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttc |
517 |
Q |
| |
|
||| || ||||||||| | | || || |||||||| || || | |||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10239490 |
cagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttc |
10239589 |
T |
|
| Q |
518 |
gttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaag |
617 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||| ||| || |||||||||||||||||||| ||| |
|
|
| T |
10239590 |
gttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaag |
10239689 |
T |
|
| Q |
618 |
aggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacatt |
717 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| |||| || |||| |
|
|
| T |
10239690 |
agatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcatt |
10239789 |
T |
|
| Q |
718 |
gtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgat |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239790 |
gtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgat |
10239889 |
T |
|
| Q |
818 |
gatgtc |
823 |
Q |
| |
|
|||||| |
|
|
| T |
10239890 |
gatgtc |
10239895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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