View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_20 (Length: 440)
Name: NF18054_high_20
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 423
Target Start/End: Original strand, 17250729 - 17251148
Alignment:
| Q |
5 |
aaaagactgtttttaaggtgcgagtttttagactactgcaaaagtggtagagacaaagtcaccaatgtcaccgaaacttaaagtcatcataatggaaacc |
104 |
Q |
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| T |
17250729 |
aaaagattgtttttaaggtgcgagtttttagactactgcaaaagtgatagagacaaagtcaccaatgttgccgaaacttaaagtcatcataatggaaacc |
17250828 |
T |
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| Q |
105 |
cccaactggcaatgtgctcacctcattagttgttggtttgtttgattcgtccttgttttctccaccgataaagataatatgtcaactaacttgcatgaat |
204 |
Q |
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| T |
17250829 |
cccaactggcaatgtgctcacctcattagttgttggtttgtttgattcgtccttgttttctccaccgataaatataatatgtcaactaactcgtatgaat |
17250928 |
T |
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| Q |
205 |
aacgacgatctcctttttgattcg-cgattatgacgagaaaagactacattttttagttgcgggtttttagactactacaaggagcatgtagcgtaaaag |
303 |
Q |
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| T |
17250929 |
aacgacgatctcctttttgatccgacgattatgacgagaaaagactacgtttttcagttgcgggtttttagactacttcaaggagcatgtagcgtaaaag |
17251028 |
T |
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| Q |
304 |
atttaactactaaggttgctagaaaaatagagaaaatgggtaaaattaagcaaagaccaatttgatcaattgagtgtgtcgagaatgatatttacggtgg |
403 |
Q |
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| T |
17251029 |
atttaactactaaggttgctagaaaaatagagaaaatgggtaaaattaagcaaagaccaatttaatcaattgagtgtgtagagaatgatatttacggtgg |
17251128 |
T |
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| Q |
404 |
tgttgacgacaaaaccttag |
423 |
Q |
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| T |
17251129 |
tgttgacgacaagaccttag |
17251148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 17250615 - 17250708
Alignment:
| Q |
129 |
attagttgttggtttgtttgattcgtccttgttttctccaccgataaagataatatgtcaactaacttgcatgaataacgacgatctccttttt |
222 |
Q |
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| T |
17250615 |
attagttgttggtttctttgtctcgtcgttgtttgcgctaccgataaagataatgtgtttactaaattgcatgtataacaatgatctccttttt |
17250708 |
T |
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