View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_24 (Length: 422)
Name: NF18054_high_24
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 31353671 - 31353318
Alignment:
| Q |
14 |
agggaaaatcaaggtccacataagatgcatatagatacacattatttatggaaagcccatgatacctaccattatgtctacaaggtacctgcatcattca |
113 |
Q |
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| T |
31353671 |
agggaaaatcaaggtccacataagatgcatgttgatacacattatttatggaaagcccatgatacctaccattatgtctacaaggtacctgcattattca |
31353572 |
T |
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| Q |
114 |
tatagtattgatcaatatttattactttaacatttacgttagaatttttactacctgggtccctccaattagccaaattgtgtagtattttacaatgttt |
213 |
Q |
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| T |
31353571 |
tatagtatcgatcaatatttattattttaacattgaccttagaatttttactacttgggtccctccaattagctatattg-gt-gtattttacaatgttt |
31353474 |
T |
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| Q |
214 |
attcactctatgattcagaccttattgtaatgtacgatcgg-nnnnnnnnccacatatactgaagggttgtcggggatccgtatattgagggtcccacaa |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||| || ||||||| |||| ||| ||| | ||||||||||||| ||||||||||||| |
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| T |
31353473 |
attcacactatgattcagaccttattgtaatgtacgattggtttttttttccacatacactgcaggtttggcagggatccgtatatcgagggtcccacaa |
31353374 |
T |
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| Q |
313 |
cagagcctacgtgccgactatattgtgcatttgtctctattcatcatacaaatcaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31353373 |
cagagcctacgtgccgactatattgtgcatttgtctctattcatcatacaaatcaa |
31353318 |
T |
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