View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_high_27 (Length: 398)
Name: NF18054_high_27
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_27 |
 | |
|
| [»] scaffold0232 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 42392403 - 42392028
Alignment:
| Q |
18 |
gaaatggccatgtgtattgttagtagtgttgcgggaaagaggttcatacca-ggtgttgagtgacctaatggatatacttcttgttaagttgttataact |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
42392403 |
gaaatggccatgtgtattgttagcagtgttgcgggaaagaggttcataccaaggtgttgagtgacgtaatggttatacttcttgttaagttgttataact |
42392304 |
T |
|
| Q |
117 |
aggagtgtgcatggttcataaaccaaaccaaaccatatccaatttatggtttggtttcttaaactgtttcagaaaaaaccaa-nnnnnnnacgaaacagt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||| |
|
|
| T |
42392303 |
aggagtgtgcatggttcataaatcaaaccaaaccatattcaatttatggtttggtttcttaacctgtttcagaaaaaaccaattttttttacgaaatagt |
42392204 |
T |
|
| Q |
216 |
tcaggtttgctttgggtccggttcagaaccggtttgtgtt---nnnnnnngcggtttatttattttaccagtttctcaaacagtttccatggcttccctt |
312 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42392203 |
tcaagtttgttttgggtccggttcagaactggtttgcattaaaaaaaaaagcggtttattcattttaccagtttctcaaacagttttcatggcttccctt |
42392104 |
T |
|
| Q |
313 |
cttagcttcttgaagtttatcttgccttttctaaggttgttttaaggatgttagttctaggtcattttgatgatgt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42392103 |
cttagcttcttgaagtttatcttgccttgtctaaggtagttttaaggatgttagttctaggtcattttgatgatgt |
42392028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 4010623 - 4010590
Alignment:
| Q |
116 |
taggagtgtgcatggttcataaaccaaaccaaac |
149 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
4010623 |
taggggtgtgcatggttcataaaccaaaccaaac |
4010590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 21423 - 21452
Alignment:
| Q |
122 |
tgtgcatggttcataaaccaaaccaaacca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21423 |
tgtgcatggttcataaaccaaaccaaacca |
21452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 7528122 - 7528163
Alignment:
| Q |
108 |
gttataactaggagtgtgcatggttcataaaccaaaccaaac |
149 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
7528122 |
gttataactaggggtgtgcatgattcatgaaccaaaccaaac |
7528163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University