View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_29 (Length: 390)
Name: NF18054_high_29
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 48402896 - 48403017
Alignment:
| Q |
28 |
tacattgagttgggcaaacaaccattttagaccaataaatgtgagacattgtcgttaagatctcaatatgtacaaattgcaaacacattgtagtacttct |
127 |
Q |
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| T |
48402896 |
tacattgagttgggcaaacaaccattttagaccaataaatgtgagacattgtcgttaagatctcaatatgtacaaattgcaaacacattgtagtacttct |
48402995 |
T |
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| Q |
128 |
tttgttattaattttatggatc |
149 |
Q |
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| T |
48402996 |
tttgttattaattttatggatc |
48403017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 239 - 378
Target Start/End: Original strand, 48403108 - 48403247
Alignment:
| Q |
239 |
caataaaccaaaatgattcataaaaaagaaatttgttcacatttttccatttttaaatttcattaatcagacgtgttcaatacaatttggtatttcaacc |
338 |
Q |
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| T |
48403108 |
caatagaccagaatgattcataaaaaagaaatttgttcacatgtttccatttttaaatttcattaatcagacatgttcaatacaatttggtatttcaccc |
48403207 |
T |
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| Q |
339 |
aatatctggaaattaactaataatgcggcttcctttgcta |
378 |
Q |
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| T |
48403208 |
aatatctggaaattagctaataatgcggcttcctttgcta |
48403247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 47300392 - 47300341
Alignment:
| Q |
295 |
atttcattaatcaga-cgtgttcaatacaatttggtatttcaaccaatatct |
345 |
Q |
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| T |
47300392 |
atttcattaatcaaaacgtgttcaatacaatttagtatttcaaccaaaatct |
47300341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 343
Target Start/End: Complemental strand, 3627509 - 3627478
Alignment:
| Q |
312 |
tgttcaatacaatttggtatttcaaccaatat |
343 |
Q |
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| T |
3627509 |
tgttcaatacaatttggtatttcaaccaatat |
3627478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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