View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_30 (Length: 378)
Name: NF18054_high_30
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 153 - 364
Target Start/End: Original strand, 29055505 - 29055716
Alignment:
| Q |
153 |
actgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatccatca |
252 |
Q |
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| T |
29055505 |
actgctaattgttatttcatcaggtttaaatcccattgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatccatca |
29055604 |
T |
|
| Q |
253 |
gtgacaactgacaacattccatgtaatttcatctgttgagttgtgactccatctttgctaatctgagaaaacagggaaagacccttcttgtattctttgt |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29055605 |
gtgacaactgacaacattccatgtaatttcatctgttgagttgtgactccatctttgctaatctgagaaaacagggaaagacccttcttgtattctttgt |
29055704 |
T |
|
| Q |
353 |
ttgtgaagtatg |
364 |
Q |
| |
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|||||||||||| |
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| T |
29055705 |
ttgtgaagtatg |
29055716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 34636777 - 34636978
Alignment:
| Q |
152 |
tactgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatccatc |
251 |
Q |
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|||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| | ||||||| ||||||| | |
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| T |
34636777 |
tactactaattgttatttcattgggtttaaatcccatattttgcatcttcctaagcatctccattgcctcttctattcacctgttctccatgcatccacc |
34636876 |
T |
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| Q |
252 |
agtgacaactgacaacattccatgtaatttcatctgttgagttgtgactccatctttgctaatctgagaaaacagggaaagacccttcttgtattctttg |
351 |
Q |
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| T |
34636877 |
aataacaa-tg------ctccaggtaacttcattt-----gtttcgactccatctctacacatctgagaaaaaagggaaagacccttctcgtattctttg |
34636964 |
T |
|
| Q |
352 |
tttgtgaagtatgt |
365 |
Q |
| |
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|||||||||||||| |
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| T |
34636965 |
tttgtgaagtatgt |
34636978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 33900165 - 33900087
Alignment:
| Q |
22 |
attccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactttc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
33900165 |
attccttgaaagactcaaatcaccgcatttggcatacatgtatactagagctactgttcttgtcaagtcccaaactttc |
33900087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 34636616 - 34636710
Alignment:
| Q |
8 |
atcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactttccgatgcc |
107 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| ||||| |
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| T |
34636616 |
atcatatcgaagacattccttgaaaaactcaaatcaccgcatttggcatacat-----atagagtgtttgtgcatgtcaagtaccaaactttccaatgcc |
34636710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 33900009 - 33899913
Alignment:
| Q |
152 |
tactgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatcc |
248 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| |||| ||||| |||| |||||||| ||||| | |||||| || |||||||| ||||| |
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| T |
33900009 |
tactactaattgttatttcattgggtttaaatcccatattttggatctttctaagcatctccaatgcctcatttattcgcccgttctccacacatcc |
33899913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 13793378 - 13793449
Alignment:
| Q |
159 |
aattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcg |
230 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13793378 |
aattgttgtttcatcaggtttaaatcccatcgtttgcatcttcctaaatatctccatcgcctcttctattcg |
13793449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 13793204 - 13793304
Alignment:
| Q |
7 |
catcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactttccgatgc |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||| ||| |||||||||| |||||| |||| |
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| T |
13793204 |
catcatatcgaagacattccttgaaagactcaaaccaccgcatttggcatacatatctactagagcgtttgtccttgccaagtcccaatctttccaatgc |
13793303 |
T |
|
| Q |
107 |
c |
107 |
Q |
| |
|
| |
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|
| T |
13793304 |
c |
13793304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 28742871 - 28742774
Alignment:
| Q |
152 |
tactgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatcca |
249 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||| ||||||| ||||||| |
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| T |
28742871 |
tactactaattgttatttcgttaggtttaaatcccattttttgcatcttcctaaacatctccactgcctcctctgatcgtccgttctccatgcatcca |
28742774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 13793503 - 13793571
Alignment:
| Q |
296 |
tgactccatctttgctaatctgagaaaacagggaaagacccttcttgtattctttgtttgtgaagtatg |
364 |
Q |
| |
|
||||| ||||| || | ||||||||||||| | |||||||||||| |||||||||||||| ||||||| |
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| T |
13793503 |
tgacttcatctctgttcatctgagaaaacatgtaaagacccttctcatattctttgtttgtaaagtatg |
13793571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 28743038 - 28742938
Alignment:
| Q |
7 |
catcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactttccgatgc |
106 |
Q |
| |
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||||||||| | ||||||||||||||| |||| || |||||||| || ||||||| || ||||| ||||| ||||||| |||| |||||||| |||| |
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| T |
28743038 |
catcatatcaaagacattccttgaaagattcaagtcgccgcatttagcatacatgtataatagagccgttgtgcttgtcaaatccccaactttccaatgc |
28742939 |
T |
|
| Q |
107 |
c |
107 |
Q |
| |
|
| |
|
|
| T |
28742938 |
c |
28742938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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