View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_31 (Length: 376)
Name: NF18054_high_31
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_31 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 33 - 376
Target Start/End: Original strand, 27777176 - 27777515
Alignment:
| Q |
33 |
cttattctgttggaaaacaaaaccaacactcatgtgatgtttgcaacaaggttttttacttctaacaaagcattgaatggacatatgatatgtcactcac |
132 |
Q |
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| T |
27777176 |
cttattctgttggaaaacaaaaccaacactcatgtgatgtttgcaacaaggtttta-acttctaacaaagcattgaatggacatatgatatgtcactcac |
27777274 |
T |
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| Q |
133 |
caactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacgacaggtgctaagaagaagaagttacatgaataatga |
232 |
Q |
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| T |
27777275 |
caactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggtactaagaagaagaagttacatgaataatga |
27777374 |
T |
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| Q |
233 |
tgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaagattgcaaggaacctgctgcctctaatcaaagtatt |
332 |
Q |
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| T |
27777375 |
tgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgaaaggaacctactgcctctaatcaaagtatt |
27777474 |
T |
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| Q |
333 |
gaagagaagaagatgaacgacgaaggtgaaacagaactagggtc |
376 |
Q |
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| T |
27777475 |
gaagagaagaagatga---atgaaggtgaaacagaactagggtc |
27777515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 33 - 376
Target Start/End: Complemental strand, 27782785 - 27782446
Alignment:
| Q |
33 |
cttattctgttggaaaacaaaaccaacactcatgtgatgtttgcaacaaggttttttacttctaacaaagcattgaatggacatatgatatgtcactcac |
132 |
Q |
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| T |
27782785 |
cttattctgttggaaaacaaaaccaacactcatgtgatgtttgcaacaaggttttt-acttctaacaaagcattgaatggacatatgatatgtcactcac |
27782687 |
T |
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| Q |
133 |
caactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacgacaggtgctaagaagaagaagttacatgaataatga |
232 |
Q |
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| T |
27782686 |
caactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggttctaagaagaagaagttacatgaataatga |
27782587 |
T |
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| Q |
233 |
tgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaagattgcaaggaacctgctgcctctaatcaaagtatt |
332 |
Q |
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| T |
27782586 |
tgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgtaaggaaccttctgcctctaatcaaagtatt |
27782487 |
T |
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| Q |
333 |
gaagagaagaagatgaacgacgaaggtgaaacagaactagggtc |
376 |
Q |
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| T |
27782486 |
gatgagaagaagatga---atgaaggtgaaacagaactagggtc |
27782446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 27780590 - 27780762
Alignment:
| Q |
33 |
cttattctgttggaaaacaaaaccaacactcatgtgatgtttgcaacaaggttttttacttctaacaaagcattgaatggacatatgatatgtcactcac |
132 |
Q |
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||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
27780590 |
cttattctgttggaaaaacaaacaaacactcgtgtgatgtttgcaacaaggtttt-tacttctaacaaagctttgaatggacatatgatatgtcactcgc |
27780688 |
T |
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| Q |
133 |
caactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacgacaggtgcta |
206 |
Q |
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| T |
27780689 |
caactgctgcaccatcttcctttgcacagagctatgatgatcagtttctaccacccaagaaacggcaggcgcta |
27780762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 38227643 - 38227572
Alignment:
| Q |
57 |
aacactcatgtgatgtttgcaacaaggttttttacttctaacaaagcattgaatggacatatgatatgtcact |
129 |
Q |
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| T |
38227643 |
aacactcatgtgatgtttgcaacaaggttttt-acttctaacaaagcattgaatggacatatgagatgtcact |
38227572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 27780947 - 27781005
Alignment:
| Q |
288 |
acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagat |
346 |
Q |
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| T |
27780947 |
acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagat |
27781005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 35250685 - 35250596
Alignment:
| Q |
40 |
tgttggaaaacaaaaccaacactcatgtgatgtttgcaacaaggttttttacttctaacaaagcattgaatggacatatgatatgtcactc |
130 |
Q |
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| T |
35250685 |
tgttggaaaacaaaataaacactcatgtgatgtttgcaacaaggt-ttttacttctaacaaagcattggatgaacataagaggtgtcactc |
35250596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 441499 - 441432
Alignment:
| Q |
60 |
actcatgtgatgtttgcaacaaggttttttacttctaacaaagcattgaatggacatatgatatgtcac |
128 |
Q |
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| T |
441499 |
actcatgtgatgtttgcaacaaggttttt-acttctaacaaagcattgcatagacataagatatgtcac |
441432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 441055 - 441005
Alignment:
| Q |
292 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaaga |
342 |
Q |
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| T |
441055 |
cacaagattgcaaggaacctcctacctctaatcatggtattgaagagaaga |
441005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 44989837 - 44989777
Alignment:
| Q |
292 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacga |
352 |
Q |
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| T |
44989837 |
cacaagattgcaaggaacctgaaggctctaatcatgatattgaatagaagaagattaacga |
44989777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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