View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_high_34 (Length: 355)

Name: NF18054_high_34
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_high_34
NF18054_high_34
[»] chr5 (5 HSPs)
chr5 (17-334)||(2998224-2998541)
chr5 (17-329)||(2998018-2998329)
chr5 (21-313)||(2997815-2998107)
chr5 (25-236)||(2998439-2998650)
chr5 (184-333)||(2997771-2997920)
[»] chr2 (8 HSPs)
chr2 (17-333)||(32716507-32716823)
chr2 (17-333)||(32716714-32717030)
chr2 (17-313)||(32717128-32717424)
chr2 (17-333)||(32716921-32717237)
chr2 (189-334)||(32716472-32716617)
chr2 (17-129)||(32717335-32717447)
chr2 (189-290)||(32714058-32714159)
chr2 (17-90)||(32714093-32714166)
[»] chr6 (7 HSPs)
chr6 (17-279)||(14904744-14905006)
chr6 (18-307)||(14905337-14905626)
chr6 (17-312)||(14904918-14905213)
chr6 (118-313)||(14905124-14905319)
chr6 (17-74)||(14904742-14904799)
chr6 (189-333)||(14905518-14905662)
chr6 (69-135)||(14903953-14904017)
[»] chr8 (5 HSPs)
chr8 (147-251)||(38454144-38454248)
chr8 (189-266)||(34544943-34545020)
chr8 (147-266)||(34916663-34916782)
chr8 (150-266)||(34534100-34534216)
chr8 (17-60)||(34534099-34534142)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 2998224 - 2998541
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2998224 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaggaacaagttttgagggtgaattctccatgaattcc 2998323  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  2998324 cgtcatagtcacgacaccctgacaaaatccgatggggatatctacgttggtaacttcgataacgatcttttccatggcaacggaaagtacatgtggtcaa 2998423  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctccaa 316  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2998424 atggaacaatatacaagggtggttggtttgatggaagaaggacagggaaaggtcggatcatatattcatcaggatcaatttttgagggtgaattctccaa 2998523  T
Q  317 gaactcccgtcatggtcg 334  Q
    ||||||||||||||||||    
T  2998524 gaactcccgtcatggtcg 2998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 2998018 - 2998329
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||||||||||||||||||||||| |  | |||||||||||||||| || |||||||||| || ||||| |||||||||||||||||| |  ||||||    
T  2998018 aatatatgagggtgattgggttgatggaagacggacagggaaaggacgaataatatatccataaaaaacaatttttgagggtgaattctcgagaaattcc 2998117  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    ||| ||||| ||| |||||| | ||||||  |||||||||||||| ||||||||||  | ||| || ||||||||||| | |||||| |||  |||||||    
T  2998118 cgtaatggttacggcacccttaaaaaatctgatggggatatctacattggtaactttgagaacaatattttccatggc-agggaaagcacacatggtcaa 2998216  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctccaa 316  Q
    |||||||| |||| ||||||| |||| |||||| |  ||||||||||||| | |||||||||| | |||||||| ||| ||||||||||||||||||||     
T  2998217 atggaacaatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaggaacaagttttgagggtgaattctccat 2998316  T
Q  317 gaactcccgtcat 329  Q
    ||| |||||||||    
T  2998317 gaattcccgtcat 2998329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 2997815 - 2998107
Alignment:
Q  21 tatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcccgtc 120  Q
    |||||||||||||||||| ||||| ||||||| |||||||||| | ||||| |||| |||||| |||||||||||||||||||||  | |||||| ||||    
T  2997815 tatgagggtgattgggttaatgaaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttaggaattctcgtc 2997914  T
Q  121 atggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaatgg 220  Q
    ||||||| | ||| || |||||||||||||||||| ||| | ||||||||||  | || ||||||||||||||||| ||||||||||  ||||||| |||    
T  2997915 atggtcatggcactcttacaaaatccaatggggatgtcttcattggtaactttgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtgg 2998014  T
Q  221 aacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctc 313  Q
    |||| |||| ||||||| |||| ||||||||||| ||||||||||| | || || |||| | ||| |  | ||||||||||||||||||||||    
T  2998015 aacaatatatgagggtgattgggttgatggaagacggacagggaaaggacgaataatatatccataaaaaacaatttttgagggtgaattctc 2998107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 2998439 - 2998650
Alignment:
Q  25 agggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcccgtcatgg 124  Q
    |||||| |||| |||||| |  ||||||||||||||| |||||||||||| ||||| || ||| |||||||||||||||||||| ||| |||||||||||    
T  2998439 agggtggttggtttgatggaagaaggacagggaaaggtcggatcatatattcatcaggatcaatttttgagggtgaattctccaagaactcccgtcatgg 2998538  T
Q  125 tcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaatggaaca 224  Q
    || || |||||| |||||||||||||||||||||||||||||||||||| | || ||| |||| |||||||| ||||||||||  || | |||| |||||    
T  2998539 tcgcggcacccttacaaaatccaatggggatatctacgttggtaacttcgagaatgatatttttcatggcaagggaaagtacacatgtttaaatagaaca 2998638  T
Q  225 gtatacgagggt 236  Q
     |||| ||||||    
T  2998639 atatatgagggt 2998650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 2997771 - 2997920
Alignment:
Q  184 ttttccatggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttc 283  Q
    |||| |||||||| ||||||||||  ||||||| ||||||| | || ||||||| |||| || ||| || |||||| |||||| | | | |||||  | |    
T  2997771 tttttcatggcaagggaaagtacacatggtcaagtggaacaatctatgagggtgattgggttaatgaaaaaaggactgggaaaggaccggtcataaatcc 2997870  T
Q  284 atcaggatcaatttttgagggtgaattctccaagaactcccgtcatggtc 333  Q
     ||| || ||| |||||||||||||||||  | ||| || ||||||||||    
T  2997871 gtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtc 2997920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 32716507 - 32716823
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||  | |||||||    
T  32716507 aatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaagttttgagggtcaattctttaggaattcc 32716606  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    |||||||||| || ||| || | ||||||| |||||| ||||||||||||||||||| | |  ||||||||||||||||| |||||||||| ||||| ||    
T  32716607 cgtcatggtcgcggcactcttaaaaaatccgatgggggtatctacgttggtaacttcgagagtgatcttttccatggcaagggaaagtacacgtggttaa 32716706  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctccaa 316  Q
    |||||||| |||| ||||||| |||| ||||||||| ||||||||||||| | |||||||||| | |||||||| ||| |||||||||| ||||||  |     
T  32716707 atggaacaatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaagttttgagggtcaattctttag 32716806  T
Q  317 gaactcccgtcatggtc 333  Q
    ||| |||||||||||||    
T  32716807 gaattcccgtcatggtc 32716823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 32716714 - 32717030
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||  | |||||||    
T  32716714 aatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaagttttgagggtcaattctttaggaattcc 32716813  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    ||||||||||||| ||| || | ||||||| |||||| ||||||||||||||||||| | |  ||||||||||||||||| ||||||||||  ||||||     
T  32716814 cgtcatggtcacggcactcttaaaaaatccgatgggggtatctacgttggtaacttcgagagtgatcttttccatggcaaaggaaagtacacatggtcac 32716913  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctccaa 316  Q
    |||||||| ||||||| |||| |||| ||||||||||||||||||||||| | |  || |||| |  ||||||| ||| |||||||||| ||||||  |     
T  32716914 atggaacaatatacgatggtgattgggttgatggaagaaggacagggaaagggcaaatgatatatctatcaggaacaagttttgagggtcaattctttag 32717013  T
Q  317 gaactcccgtcatggtc 333  Q
    ||| |||||||||||||    
T  32717014 gaattcccgtcatggtc 32717030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 32717128 - 32717424
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||| ||||||||||||||||||| |  || ||| |||||||| | |||||||||||||||| || ||| |||||||||||||||||||  |||||||    
T  32717128 aatatacgagggtgattgggttgatggaagaatgactgggaaaggtcagatcatatatccatcaggatcaacttttgagggtgaattctccgggaattcc 32717227  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    ||||||||||||| |||||| | ||||||  |||||||||||||| ||||||||||| | |  ||||||| ||||||||| ||||||||||  |||| |     
T  32717228 cgtcatggtcacggcacccttaaaaaatctgatggggatatctacattggtaacttcgagagtgatctttaccatggcaaaggaaagtacacatggttag 32717327  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctc 313  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||| | ||||| |||| | |||||||| ||| ||||||||||||||||||    
T  32717328 atggaacaatatacgagggtgattgggttgatggaagaaggacagggaaaggacggataatatatccatcaggagcaagttttgagggtgaattctc 32717424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 32716921 - 32717237
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||| || |||||||||||||||| |  ||||||||||||||| |  || ||||||| |||| ||||||||||||||||| ||||||  | |||||||    
T  32716921 aatatacgatggtgattgggttgatggaagaaggacagggaaagggcaaatgatatatctatcaggaacaagttttgagggtcaattctttaggaattcc 32717020  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    ||||||||||| | |||||| || | |||||||||| || ||||| ||||||||||||| |  ||||||||| ||||||| ||||||||||  ||| ||     
T  32717021 cgtcatggtcaaggcacccttaccatatccaatgggcatgtctacattggtaacttcaagagtgatcttttcaatggcaagggaaagtacacatggccag 32717120  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctccaa 316  Q
    |||||  | |||||||||||| |||| |||||||||||| ||| |||||| ||| |||||||| | |||||||||||| |||||||||||||||||||      
T  32717121 atggagaaatatacgagggtgattgggttgatggaagaatgactgggaaaggtcagatcatatatccatcaggatcaacttttgagggtgaattctccgg 32717220  T
Q  317 gaactcccgtcatggtc 333  Q
    ||| |||||||||||||    
T  32717221 gaattcccgtcatggtc 32717237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 32716472 - 32716617
Alignment:
Q  189 catggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcag 288  Q
    |||||||| ||||||||||  ||||||||||||||| |||| ||||||| |||| ||||||||| ||||||||||||| | |||||||||| | ||||||    
T  32716472 catggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcag 32716571  T
Q  289 gatcaatttttgagggtgaattctccaagaactcccgtcatggtcg 334  Q
    || ||| |||||||||| ||||||  | ||| ||||||||||||||    
T  32716572 gagcaagttttgagggtcaattctttaggaattcccgtcatggtcg 32716617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 32717335 - 32717447
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||| ||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| | |||||||    
T  32717335 aatatacgagggtgattgggttgatggaagaaggacagggaaaggacggataatatatccatcaggagcaagttttgagggtgaattctctaggaattcc 32717434  T
Q  117 cgtcatggtcacg 129  Q
      |||||||||||    
T  32717435 tttcatggtcacg 32717447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 32714058 - 32714159
Alignment:
Q  189 catggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcag 288  Q
    |||||||| ||||||||||  ||||||||||||||| |||| ||||||| |||| ||||||||| ||||||||||||| | |||||||||| | ||||||    
T  32714058 catggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcag 32714157  T
Q  289 ga 290  Q
    ||    
T  32714158 ga 32714159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 32714093 - 32714166
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagtt 90  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||||||    
T  32714093 aatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaagtt 32714166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 14905006 - 14904744
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||| ||||| |||| ||||||| ||  ||||||||||||||||||||  |   ||||     
T  14905006 aatatatgagggtgactgggttgatggaaaaaagacagggaaagggcggatgatatttccatcaggagaaagttttgagggtgaattctttaaagattct 14904907  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
    |||||||||||||||||||| | ||||||||| |||||| ||||| ||||||||||||| || ||||||||||||||||| ||||| ||||  ||||| |    
T  14904906 cgtcatggtcacgacacccttataaaatccaacggggatgtctacattggtaacttcaagaatgatcttttccatggcaaaggaaaatacacatggtcga 14904807  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatat 279  Q
    |||||| | |||| ||||||| |||| ||||||||||||||||||||||||| | ||||||||    
T  14904806 atggaaaaatatatgagggtgattgggttgatggaagaaggacagggaaatgacagatcatat 14904744  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 14905626 - 14905337
Alignment:
Q  18 atatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattccc 117  Q
    |||||||||||||| |||||||| | | ||||||| |||||||| ||||| |||||||||||| || |||||||||||||||||||||  | ||||||||    
T  14905626 atatatgagggtgactgggttgacggagaaaggactgggaaagggcggatgatatatccatcaggagcaagttttgagggtgaattctttaggaattccc 14905527  T
Q  118 gtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaa 217  Q
    |||||||||| | |||||| ||||||||||| ||| || ||||| ||||||||||||| |  | |  |||||||||||| ||||||||||  |||||| |    
T  14905526 gtcatggtcaaggcacccttacaaaatccaacgggaatctctacattggtaacttcaagagtggttctttccatggcaagggaaagtacacatggtcaga 14905427  T
Q  218 tggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtga 307  Q
    ||||    |||| |||||||  ||| |||| |||| || |||||| ||| | |||||| ||| | |||||||| ||| |||||| |||||    
T  14905426 tggagagatatatgagggtgactgggttgacggaaaaaagacaggtaaagggcggatcttatatccatcaggagcaaattttgatggtga 14905337  T

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Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 14905213 - 14904918
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaagaacaagttttgagggtgaattctccatgaattcc 116  Q
    |||||||||||||||||||||| ||| |   ||||||||||||||||| || || | |||||||  | ||||||||||||||| |||||| |||||   |    
T  14905213 aatatatgagggtgattgggtttatggaagcaggacagggaaaggacgaatgatctttccatcagaagcaagttttgagggtggattctcaatgaacatc 14905114  T
Q  117 cgtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaa 216  Q
     ||||||| ||||||||||| |||| |||||| |||||| ||||  ||||||||||  | || | ||||||||||||||| ||||||||||  ||||||     
T  14905113 agtcatggacacgacacccttacaagatccaacggggatctctatattggtaactttgagaatggtcttttccatggcaagggaaagtacacatggtcag 14905014  T
Q  217 atggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattct 312  Q
     ||||  | |||| |||||||  ||| ||||||||| || |||||||||| | ||||| |||||| ||||||||  || |||||||||||||||||    
T  14905013 gtggacaaatatatgagggtgactgggttgatggaaaaaagacagggaaagggcggatgatatttccatcaggagaaagttttgagggtgaattct 14904918  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 313
Target Start/End: Complemental strand, 14905319 - 14905124
Alignment:
Q  118 gtcatggtcacgacaccctgacaaaatccaatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaa 217  Q
    |||||||||||| |||| | ||| | |||||||||||| ||||||||||||||||| | ||  |||||||||||||||| ||||||| ||  |||||| |    
T  14905319 gtcatggtcacggcacctttacacattccaatggggatgtctacgttggtaacttcgagaataatcttttccatggcaagggaaagtgcacatggtcaga 14905220  T
Q  218 tggaacagtatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatcaggatcaatttttgagggtgaattctc 313  Q
     |||  | |||| ||||||| |||| || ||||||| |||||||||||| | || || || ||| |||||| | ||| ||||||||||| ||||||    
T  14905219 gggagaaatatatgagggtgattgggtttatggaagcaggacagggaaaggacgaatgatctttccatcagaagcaagttttgagggtggattctc 14905124  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 14904799 - 14904742
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatat 74  Q
    |||||||||||||||||||||||||| |  ||||||||||||| ||| ||||||||||    
T  14904799 aatatatgagggtgattgggttgatggaagaaggacagggaaatgacagatcatatat 14904742  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 333
Target Start/End: Complemental strand, 14905662 - 14905518
Alignment:
Q  189 catggcaacggaaagtacatgtggtcaaatggaacag-tatacgagggtggttggtttgatggaagaaggacagggaaatgtcggatcatattttcatca 287  Q
    |||||||| |||| |||||  |||||| ||||| ||| |||| |||||||  ||| |||| |||  |||||| |||||| | ||||| |||| | |||||    
T  14905662 catggcaaaggaatgtacagatggtcagatgga-cagatatatgagggtgactgggttgacggagaaaggactgggaaagggcggatgatatatccatca 14905564  T
Q  288 ggatcaatttttgagggtgaattctccaagaactcccgtcatggtc 333  Q
    ||| ||| |||||||||||||||||  | ||| |||||||||||||    
T  14905563 ggagcaagttttgagggtgaattctttaggaattcccgtcatggtc 14905518  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 14904017 - 14903953
Alignment:
Q  69 atatatccatcaagaacaagttttgagggtgaattctccatgaattcccgtcatggtcacgacaccc 135  Q
    |||||||||| | ||||||||||||||||||||  ||| |||||||||  ||| |||||||||||||    
T  14904017 atatatccattaggaacaagttttgagggtgaa--ctctatgaattcctttcaaggtcacgacaccc 14903953  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 38454248 - 38454144
Alignment:
Q  147 aatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttg 246  Q
    ||||||||| |||||||||||||||||||  | || ||||| |||||||||||||||| ||  | ||||  |||| ||||||| ||||||| |||| |||    
T  38454248 aatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatgtggatcagtatatgagggtgattggattg 38454149  T
Q  247 atgga 251  Q
    |||||    
T  38454148 atgga 38454144  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 34545020 - 34544943
Alignment:
Q  189 catggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttgatggaagaaggacagggaaa 266  Q
    ||||||| |||||||||||  ||| ||||||||||| ||||||||||||  ||| ||||||||| || ||||||||||    
T  34545020 catggcatcggaaagtacacatggacaaatggaacaatatacgagggtgactgggttgatggaaaaatgacagggaaa 34544943  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 34916782 - 34916663
Alignment:
Q  147 aatggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttg 246  Q
    ||||||||| ||||| ||||||| |||||    || ||| |||||||||  ||||||||||  ||| ||||||||||| ||||||||||||  ||| |||    
T  34916782 aatggggatgtctacattggtaaattcaagggtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatatacgagggtgactgggttg 34916683  T
Q  247 atggaagaaggacagggaaa 266  Q
    |||||| |  ||||||||||    
T  34916682 atggaaaagtgacagggaaa 34916663  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 34534216 - 34534100
Alignment:
Q  150 ggggatatctacgttggtaacttcaacaacgatcttttccatggcaacggaaagtacatgtggtcaaatggaacagtatacgagggtggttggtttgatg 249  Q
    |||||| ||||| |||||||||||||    || ||||  ||||||||||| |||||||  |||||| |||||||| |||| ||||| | |||| ||||||    
T  34534216 ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatatgagggcgattgggttgatg 34534117  T
Q  250 gaagaaggacagggaaa 266  Q
    ||  || ||||||||||    
T  34534116 gacaaatgacagggaaa 34534100  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 34534142 - 34534099
Alignment:
Q  17 aatatatgagggtgattgggttgatgaacaaaggacagggaaag 60  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||    
T  34534142 aatatatgagggcgattgggttgatggacaaatgacagggaaag 34534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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