View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_high_39 (Length: 346)
Name: NF18054_high_39
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 33730607 - 33730295
Alignment:
| Q |
14 |
cataggataaagaaattgccctaaaagatgaattgattaaaacctcattatcaccctagaacacattgtattcattcctccaattatatggtacaacgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33730607 |
cataggataaagaaattgccctaaaagatgaattgattaaaaccacattaccaccctagaacacat---attcattcctccaattatatggtacaacgtt |
33730511 |
T |
|
| Q |
114 |
tacatgatttacgtgtttcaaggacttgttccttaaaaattacctcacaagtagtctcataaaacagcacaatgggccagttcc-acnnnnnnnnnnctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||| |
|
|
| T |
33730510 |
tacatgatttacgtgtttcaaggacttgttccttaaaaattacctcacaagtagtctcataaaa-tgcacgatgggccagttccaaaaaaaaaaaaactt |
33730412 |
T |
|
| Q |
213 |
ggcaaatggctcgttaaatacattattgcaacaatcatatctacttacgtttcgaggaatcggcaaaccatttgttttgctcttctgaggcaattttgcc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
33730411 |
ggcaaatggctcgttaaatacattattgcaacaatcatatctacttacgtttcgaggaatcgacagaccatttgttttgctcttctgaggcaattttgcc |
33730312 |
T |
|
| Q |
313 |
agtttagtatgatattt |
329 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
33730311 |
agtttggtatgatattt |
33730295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University