View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_4 (Length: 721)
Name: NF18054_high_4
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_4 |
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| [»] scaffold0054 (5 HSPs) |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 587; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 27 - 686
Target Start/End: Complemental strand, 24415897 - 24415238
Alignment:
| Q |
27 |
tgacaatatcgcagaaagtttgataaaagaaagctccaaatccatcgggaccaggagcactttctttgttgaggggaaaaactgcagctttgatctcttg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415897 |
tgacaatatcgcagaaagtttgataaaagaaagctccaaatccatcgggaccaggagcactttctttgttgaggggaaaaactgcagctttgatctcttg |
24415798 |
T |
|
| Q |
127 |
atgggaaggaagcatggtcatcagagcattagtatcactagtgatcaaatgagggataacttcttcaacaagcaactgttcttgcaaaagaataccagta |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
24415797 |
atgggaaggaagcatggtcatcagagcattagtatcactagtgatcaaatgagggataacttcttcagcaagcaactgttcttgcaaaagaatattagta |
24415698 |
T |
|
| Q |
227 |
caaaaaagatacatgtagatgttagagaactaatgagaaaaatttgtgtacaacaaataatatgcaacatcgtatnnnnnnngttctattcactctcaga |
326 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
24415697 |
caaaaaagatacaggtagatgttagagaactaatgagaaaaatttgtgtacaacaaataatatgcaacatcatataaaaaaagttctattcactctcaga |
24415598 |
T |
|
| Q |
327 |
cccttgaacatgtaagttaggtacaagtaagaagagcaaactacgtacaatggttaaagaacagttgagtatcaattatatataatgtctccatgtagaa |
426 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415597 |
cccttgaacatgtaagttaggtacaagtaagaagaccaaactacgtacaatggttaaagaacagttgagtatcaattatatataatgtctccatgtagaa |
24415498 |
T |
|
| Q |
427 |
aactggtagaaatcacacgctagtaccaaatttgtctatgaggattagattatattcgtcataagaagaacagtagaggtgagaatcgataatagattgg |
526 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24415497 |
aactggtagaaatcgcgcgctagtaccaaatttgtctatgaggattagattatattcttcataagaagaacaatagaggtgagaatcgataatagattgg |
24415398 |
T |
|
| Q |
527 |
taaaccatgatatctaaaagcaaaatagtaaattggaaacaaaccaaaactaaaactgtcactttcttattatgagccttttttcatcttccaaggtagt |
626 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24415397 |
taaaccatgatatgtaaaagcaaaatagtaaattggaaacaaaccaaaactaaaactgtcactttcttattatgacccttttttcatcttccaaggtagt |
24415298 |
T |
|
| Q |
627 |
attattatacttatttatttttgatgcatttcccgttttcattttggtactagcctatga |
686 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24415297 |
attattatacttatttatttttgatgcatttcccgttatcattttggtactagcctatga |
24415238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 29154996 - 29154852
Alignment:
| Q |
89 |
tctttgttgaggggaaaaactgcagctttgatctcttgatgggaaggaagcatggtcatcagagcattagtatcactagtgatcaaatgagggataactt |
188 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| | |||| |||||| ||| ||||||||||||||||||| |
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| T |
29154996 |
tctttgttgaggacaaaaactgcagctttgatctgttgatggtgtggaagcatggtcagtaa--catttatatcaccagtcatcaaatgagggataactt |
29154899 |
T |
|
| Q |
189 |
cttcaacaagcaactgttcttgcaaaagaataccagtacaaaaaaga |
235 |
Q |
| |
|
||||| ||||||||||||| || ||| ||||| |||||||||||||| |
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| T |
29154898 |
cttcagcaagcaactgttcctgtaaatgaatatcagtacaaaaaaga |
29154852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 29146270 - 29146193
Alignment:
| Q |
159 |
tatcactagtgatcaaatgagggataacttcttcaacaagcaactgttcttgcaaaagaataccagtacaaaaaagat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
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| T |
29146270 |
tatcactagtgatcaaatgagggataacttcttcagcaagcaactgttcctgcaaaagaatattagtacaaaaaagat |
29146193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 498
Target Start/End: Original strand, 32958241 - 32958346
Alignment:
| Q |
389 |
agttgagtatcaattatatataatgtctccatgtagaaaactggtagaaatcacacgctagtaccaaatttgtctatgaggattagattatattcgtcat |
488 |
Q |
| |
|
|||||||||||||||||| || | ||||| || |||| | |||||||||||||| |||||||||||||||| ||| || ||||||||| |||||| | |
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| T |
32958241 |
agttgagtatcaattata----atttttccatttaaaaaagttgtagaaatcacacgttagtaccaaatttgtcaatggggcttagattatcttcgtcgt |
32958336 |
T |
|
| Q |
489 |
aagaagaaca |
498 |
Q |
| |
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|||||||||| |
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| T |
32958337 |
aagaagaaca |
32958346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 29146170 - 29146107
Alignment:
| Q |
228 |
aaaaaagatacatgtagatgttagagaactaatgagaaaaatttgtgtacaacaaataatatgcaa |
293 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||| ||| ||||||| ||||||||||||| |
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| T |
29146170 |
aaaaaagctacatgtagatgttagaaaa--aatgagaaatttttttgtacaataaataatatgcaa |
29146107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 376 - 525
Target Start/End: Complemental strand, 42978 - 42830
Alignment:
| Q |
376 |
atggttaaagaacagttgagtatcaattatatataatgtctccatgtagaaaactggtagaaatcacacgctagtaccaaatttgtctatgaggattaga |
475 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| || || ||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
42978 |
atggttaaagaacagttaagtatcaat-atacatgatttctccttttagaaaactggtagaaatcacacgctaataccaaatttgtctatgtggattaga |
42880 |
T |
|
| Q |
476 |
ttatattcgtcataagaagaacagtagaggtgagaatcgataatagattg |
525 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
42879 |
ttatattcgtcataagaagaaaagtagcagtgagaattgataatagattg |
42830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 227 - 378
Target Start/End: Complemental strand, 43236 - 43088
Alignment:
| Q |
227 |
caaaaaagatacatgtagatgttagagaactaatgagaaaaatttgtgtacaacaaataatatgcaacatcgtatnnnnnnngttctattcactctcaga |
326 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||| |||||| |
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| T |
43236 |
caaaaaagatacatgtaggtgttagagaactaatgagaaaaatttgtgtacaa-taataatatgcagcatcatataaaaaaagttctattca--ctcaga |
43140 |
T |
|
| Q |
327 |
cccttgaacatgtaagttaggtacaagtaagaagagcaaactacgtacaatg |
378 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||| |||| ||||||||||| |
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|
| T |
43139 |
cccatgaacatgtaagttaggtataagtaagaagatcaaaatacgtacaatg |
43088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 618 - 685
Target Start/End: Complemental strand, 42546 - 42480
Alignment:
| Q |
618 |
caaggtagtattattatacttatttatttttgatgcatttcccgttttcattttggtactagcctatg |
685 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42546 |
caaggtagtagtattatacttatttattttt-atgcatttcccgttttcattttggtactagcctatg |
42480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 43337 - 43284
Alignment:
| Q |
38 |
cagaaagtttgataaaagaaagctccaaatccatcgggaccaggagcactttct |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
43337 |
cagaaagtttgataaaagaaagctccaaatccaccaggaccaggagaactttct |
43284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 596
Target Start/End: Complemental strand, 38206 - 38163
Alignment:
| Q |
553 |
agtaaattggaaacaaaccaaaactaaaactgtcactttcttat |
596 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
38206 |
agtaaattggaaacaaacacaaattaaaactgtcactttcttat |
38163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 32249699 - 32249795
Alignment:
| Q |
51 |
aaaagaaagctccaaatccatcgggaccaggagcactttctttgttgaggggaaaaactgcagctttgatctcttgatgggaaggaagcatggtcat |
147 |
Q |
| |
|
||||||| || ||||| ||||| ||||| |||||||| || |||||||||| ||||||||| |||||||| || ||||| || || ||||||||||| |
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| T |
32249699 |
aaaagaatgccccaaagccatctggacctggagcactatccttgttgagggcaaaaactgctgctttgatttcctgatgagatggtagcatggtcat |
32249795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 1159 - 1265
Alignment:
| Q |
29 |
acaatatcgcagaaagtttgataaaagaaagctccaaatccatcgggaccaggagcactttctttgttgaggggaaaaactgcagctttgatctcttgat |
128 |
Q |
| |
|
|||||||| ||| || |||| |||||||||||||| | ||||| |||| ||| ||||| || |||||||||| ||||| |||||||| |||||||| | |
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|
| T |
1159 |
acaatatcccagtaatgttgaaaaaagaaagctccataaccatcaggactaggggcactgtccttgttgagggcaaaaatagcagcttttatctcttggt |
1258 |
T |
|
| Q |
129 |
gggaagg |
135 |
Q |
| |
|
| ||||| |
|
|
| T |
1259 |
gtgaagg |
1265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 11982646 - 11982581
Alignment:
| Q |
31 |
aatatcgcagaaagtttgataaaagaaagctccaaatccatcgggaccaggagcactttctttgtt |
96 |
Q |
| |
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|||||| || |||||||||||||| | |||||||||||||| ||||| || |||||||||||||| |
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|
| T |
11982646 |
aatatcccaaaaagtttgataaaaaagtgctccaaatccatcaggacctggggcactttctttgtt |
11982581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 15802339 - 15802398
Alignment:
| Q |
177 |
gagggataacttcttcaacaagcaactgttcttgcaaaagaataccagtacaaaaaagat |
236 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||| | |||||||||||||| |
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|
| T |
15802339 |
gagggatgacttcttcaacaagtaactgttcctgcaaaagactgttagtacaaaaaagat |
15802398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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