View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_41 (Length: 341)
Name: NF18054_high_41
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 34978243 - 34978556
Alignment:
| Q |
18 |
gtaacctaataggcgacgatcagacaaccagttgtaaagaacatgatgaaagcgctatactttcagtttaccgttggagttctgccattatatctggtta |
117 |
Q |
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| T |
34978243 |
gtaacctaataggcgacgatcagacaaccagttgtaaagaacatgatgaaagcgctatactttcagtttaccgttggagttctgccattatatctggtta |
34978342 |
T |
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| Q |
118 |
cctttgcaggatactgggcttatggatcttcgacacaaacttttttgctgaataatgtcaagggtccaatctgggtgaaagttgtggcaaatattacagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34978343 |
cctttgcaggatactgggcttatggatcttcgacacaaacttttttgctgaataatgtcaagggtccaatctgggtgaaagttgtggcaaatattacagc |
34978442 |
T |
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| Q |
218 |
ctttcttcaatcagtcattgcattgcatgtaatcacttctaaaccaatattttactgcttataaaaattcggtttaaatgctattttagtccccactatt |
317 |
Q |
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| T |
34978443 |
ctttcttcaatcagtcattgcattgcatgtaatcacttctaaaccaatattttactgcttataaaaatttggtttaaatgctattttagtcccccctatt |
34978542 |
T |
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| Q |
318 |
ttgttccacctatg |
331 |
Q |
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| T |
34978543 |
ttgttccacttatg |
34978556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 42 - 248
Target Start/End: Original strand, 31321937 - 31322143
Alignment:
| Q |
42 |
caaccagttgtaaagaacatgatgaaagcgctatactttcagtttaccgttggagttctgccattatatctggttacctttgcaggatactgggcttatg |
141 |
Q |
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||||||||||| ||||||||||||||| | || | |||||||||||| ||||| || | ||| | || |||||||||||||||||||||||||||||| |
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| T |
31321937 |
caaccagttgtcaagaacatgatgaaatccctgtggtttcagtttaccattggacttgtaccaatgtacatggttacctttgcaggatactgggcttatg |
31322036 |
T |
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| Q |
142 |
gatcttcgacacaaacttttttgctgaataatgtcaagggtccaatctgggtgaaagttgtggcaaatattacagcctttcttcaatcagtcattgcatt |
241 |
Q |
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|| | |||| |||| | ||||||||||| ||| || |||||| |||||||||| | |||| |||||||||||||| |||||||||||||||||||| |
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| T |
31322037 |
gaaataagacagaaacctatttgctgaatagtgtgaacggtccagcttgggtgaaagctttggccaatattacagccttccttcaatcagtcattgcatt |
31322136 |
T |
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| Q |
242 |
gcatgta |
248 |
Q |
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|||||| |
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| T |
31322137 |
acatgta |
31322143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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