View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_high_44 (Length: 330)

Name: NF18054_high_44
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_high_44
NF18054_high_44
[»] chr2 (2 HSPs)
chr2 (1-313)||(45200042-45200353)
chr2 (124-222)||(21983195-21983293)
[»] chr6 (1 HSPs)
chr6 (122-228)||(3151583-3151689)
[»] chr1 (2 HSPs)
chr1 (130-204)||(1499297-1499371)
chr1 (131-198)||(1459378-1459445)
[»] chr4 (2 HSPs)
chr4 (124-225)||(48439763-48439864)
chr4 (125-212)||(44529646-44529733)
[»] chr3 (1 HSPs)
chr3 (131-226)||(50273336-50273431)
[»] chr8 (2 HSPs)
chr8 (128-198)||(975606-975676)
chr8 (131-212)||(26787234-26787315)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 45200042 - 45200353
Alignment:
Q  1 cctgccaatctggtggttccccctgtatgttacaagtgacgagacagtaaaaaacaagcnnnnnnnncataagcaaatcaaatataacaatagccatgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  45200042 cctgccaatctggtggttccccctgtatgttacaagtgacgagacagtaaaaaacaagcaaaaaaa-cataagcaaatcaaatataacaatagccatgta 45200140  T
Q  101 atagcctaatcatatgaagaacgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45200141 atagcctaatcatatgaagaacgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagc 45200240  T
Q  201 ccaagaatttcaggaatttgctttcctgtttgagtgcaaattaattaagattagtcattgttatgaattaagaaattttgtaaaaatgcaattatagatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45200241 ccaagaatttcaggaatttgctttcctgtttgagtgcaaattaattaagattagtcattgttatgaattaagaaattttgtaaaaatgcaattatagatt 45200340  T
Q  301 agttgcatgatgg 313  Q
    |||||||||||||    
T  45200341 agttgcatgatgg 45200353  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 21983195 - 21983293
Alignment:
Q  124 tacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgct 222  Q
    |||||||||||| |||||| |||| |||||||| ||||| || |||||||||||||| |  |||||||||||||| ||||| || || |||| ||||||    
T  21983195 tacccctccattggccaatacaatggccatgattgcagctgcctccatgacccatgataatggattccacataaaacccaaaaacttgaggagtttgct 21983293  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 3151689 - 3151583
Alignment:
Q  122 cgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgc 221  Q
    ||||| |||||||| ||||| |||||||||||||| || ||||||||||| |||||||| || |||||||||||||| ||||| || ||||  || ||||    
T  3151689 cgtactcctccattggccaaagcaatagccatgattgctgcagcttccatcacccatgaaagaggattccacataaatcccaaaaacttcaaaaacttgc 3151590  T
Q  222 tttcctg 228  Q
    |||||||    
T  3151589 tttcctg 3151583  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 1499297 - 1499371
Alignment:
Q  130 tccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaa 204  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |  |||||||||||||| |||||    
T  1499297 tccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaaggattccacataaaacccaa 1499371  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 1459445 - 1459378
Alignment:
Q  131 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 198  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  || |||||||||||    
T  1459445 ccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaagggttccacataaa 1459378  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 48439763 - 48439864
Alignment:
Q  124 tacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctt 223  Q
    ||||||||||||||||||| |||| ||||| |  |||||| | ||||| |||||||| || ||||||||||| || ||||||||||| || || ||||||    
T  48439763 tacccctccatttgccaatccaatggccataagggcagcaacctccataacccatgatagtggattccacatgaaacccaagaatttaagtaacttgctt 48439862  T
Q  224 tc 225  Q
    ||    
T  48439863 tc 48439864  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 44529733 - 44529646
Alignment:
Q  125 acccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttca 212  Q
    |||||||||||||| | |||||||||||| |||||||| || ||||| ||||| || || |||||||||||||| ||||  |||||||    
T  44529733 acccctccatttgcaagtgcaatagccattatagcagctgcctccataacccaagaaagaggattccacataaatcccagaaatttca 44529646  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 50273431 - 50273336
Alignment:
Q  131 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctttcc 226  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||||| || ||||| ||||  || |||||||||    
T  50273431 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc 50273336  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 975606 - 975676
Alignment:
Q  128 cctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 198  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  975606 cctccatgtgccatagcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaa 975676  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 26787315 - 26787234
Alignment:
Q  131 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttca 212  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  || ||||||||||| ||||| |||||||    
T  26787315 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccacataaaacccaaaaatttca 26787234  T

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