View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_high_47 (Length: 318)
Name: NF18054_high_47
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_47 |
 | |
|
| [»] scaffold0769 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 29055439 - 29055159
Alignment:
| Q |
28 |
aatgatctttgcaaatgcgatgcacgggaatggagaataagcattttttctcttcgagaagatgctactatcaaggggcaaacctgattttgttactttt |
127 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29055439 |
aatggtctttgcaaatgcgatgcacgggaatggaaaataagcattttttctcttcgagaagatgctactatcaaggggcaagcctgattttgttactttt |
29055340 |
T |
|
| Q |
128 |
acttgtgttctatctgcctgtagccattcaaggcaagtagaggaaggagtccagatatttaactcaatgagtagggaacatcgtgttgaacctgatgcta |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29055339 |
acttgtgttctatctgcctgtagccattcaaggcaagtagaggaaggagtccagatatttaactcaatgagtagggaacatcgtgtagaacctgatgcta |
29055240 |
T |
|
| Q |
228 |
aacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggcatgagtttatacagagaatgcctatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29055239 |
aacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggcatgagtttatacagagaatgcctatg |
29055159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 34636593 - 34636303
Alignment:
| Q |
20 |
tggaacacaatgatctttgcaaatgcgatgcacgggaatggagaataagcattttttctcttcgagaagatgctactatcaaggggcaaacctgattttg |
119 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| || ||||| | |||||||| ||||||||||||||||||| || ||| || |||| || |
|
|
| T |
34636593 |
tggaccacaatgatcaatgcaaatgcgatgcacgggaatggaaaagaagcactctttctctttgagaagatgctactatcaatggtcaagcccgattctg |
34636494 |
T |
|
| Q |
120 |
ttacttttacttgtgttctatctgcctgtagccattcaaggcaagtagaggaaggagtccagatatttaactcaatgagtagggaacatcgtgttgaacc |
219 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| |||| ||||||||| |
|
|
| T |
34636493 |
ttacttttatttgtgttctatctagctgtagccattcaaggctggtagaggaaggagtccagatattcaattcaatgagtaaggatcatcttgttgaacc |
34636394 |
T |
|
| Q |
220 |
tgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggc--atgagtttatacagagaatgcctatg |
308 |
Q |
| |
|
| |||||| ||| ||||||||||||||||||||||||| ||||| |||||||||| | || || ||||||||||||| |||||||||||| |
|
|
| T |
34636393 |
taatgctatacattattcatgtgtggtcgatatctatagccgtgctggtcgcctcaatgaagcatatgagtttatacaaagaatgcctatg |
34636303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 33900202 - 33900283
Alignment:
| Q |
20 |
tggaacacaatgatctttgcaaatgcgatgcacgggaatggagaataagcattttttctcttcgagaagatgctactatcaa |
101 |
Q |
| |
|
|||| ||| ||||| |||||||||| |||||| ||||||||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33900202 |
tggagcacgatgatatttgcaaatgggatgcatgggaatggaaaagaagcactttttctcttcgagaagatgctactatcaa |
33900283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 13793183 - 13792892
Alignment:
| Q |
19 |
atggaacacaatgatctttgcaaatgcgatgcacgggaatggagaataagcattttttctcttcgagaagatgctactatcaaggggcaaacctgatttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| || ||||| ||| ||||||||||||||||||||||||| || |||||| |||| | |
|
|
| T |
13793183 |
atggaacacaatgatctttgcaaatgggatgcatgggaatggaaaagaagcactttcactcttcgagaagatgctactatcaatggtcaaacccgattct |
13793084 |
T |
|
| Q |
119 |
gttacttttacttgtgttctatctgcctgtagccattcaaggcaagtagaggaaggagtccagatatttaactcaatgagtagggaacatcgtgttgaac |
218 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||| || |||||||||||||| |||| |||||||| |
|
|
| T |
13793083 |
gctacttttacttgtgttctatctgcttgtagccattcaatgctagtagaagaaggagtccagatattcaattcaatgagtagggatcatcttgttgaac |
13792984 |
T |
|
| Q |
219 |
ctgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggc--atgagtttatacagagaatgcctatg |
308 |
Q |
| |
|
|||| ||| | |||||| ||||||||||||||||||||| ||||| |||| ||||||| || || ||| |||||||||||||||||||||| |
|
|
| T |
13792983 |
ctgaagctgagcactatacatgtgtggtcgatatctatagccgtgctggttgcctcgaagaagcatatgggtttatacagagaatgcctatg |
13792892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 28743060 - 28743350
Alignment:
| Q |
20 |
tggaacacaatgatctttgcaaatgcgatgcacgggaatggagaataagcattttttctcttcgagaagatgctactatcaaggggcaaacctgattttg |
119 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| ||||||||| || |||| |||||||||| || ||||||||||||||| | | | | || ||| || |
|
|
| T |
28743060 |
tggaacacaatgatcattgcgaatgcaatgcatgggaatggaaaagaagcgctttttctctttgataagatgctactatcacgtgtccagcccaattctg |
28743159 |
T |
|
| Q |
120 |
ttacttttacttgtgttctatctgcctgtagccattcaaggcaagtagaggaaggagtccagatatttaactcaatgagtagggaacatcgtgttgaacc |
219 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||||| || |||||| ||||||| |||| ||| ||||| |
|
|
| T |
28743160 |
ttacttttactggtgttctatctggttgtagccattcaaggctagtagaggaaggagttcagatattcaattcaatgggtagggatcatcttgtagaacc |
28743259 |
T |
|
| Q |
220 |
tgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggcat--gagtttatacagagaatgcctatg |
308 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||||| ||||| |||||||||| ||||||||| ||||||||||| | ||||||||| |
|
|
| T |
28743260 |
tgatgctaatcactattcatgcgtcgttgatatctatagccgtgctggtcgcctcaacgaggcatacaagtttatacagggcatgcctatg |
28743350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 3492 - 3611
Alignment:
| Q |
192 |
caatgagtagggaacatcgtgttgaacctga-tgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggc--atgagt |
288 |
Q |
| |
|
||||||||| ||| |||| |||||||||| | ||||| ||| ||||||||||||||||||||||||| ||||| |||||||||| | || || |||||| |
|
|
| T |
3492 |
caatgagtaaggatcatcttgttgaacctaaatgctatacattattcatgtgtggtcgatatctatagccgtgctggtcgcctcaatgaagcatatgagt |
3591 |
T |
|
| Q |
289 |
ttatacagagaatgcctatg |
308 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
3592 |
ttatacaaagaatgcctatg |
3611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University