View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_55 (Length: 282)
Name: NF18054_high_55
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_55 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 14414512 - 14414300
Alignment:
| Q |
1 |
cttcaacatctcttctttgagagatatgaaccttggtagtaacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattg |
100 |
Q |
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| T |
14414512 |
cttcaacatctcttcgttgagagtgatcagccttttgggtaacaatttaaatggaattcttccacatgagacgtgtaatcaacttcctcaacttaaaagt |
14414413 |
T |
|
| Q |
101 |
ttttttctatacaataattttcttgaaggaaccattccacgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacag |
200 |
Q |
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| T |
14414412 |
ttcttcctacacaataattatcttgaaggaaccattccacgatcaattggcaactgcacatcgttacaagagttatatttatataataacttttttacag |
14414313 |
T |
|
| Q |
201 |
gtatttccttaac |
213 |
Q |
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|||| ||||||| |
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| T |
14414312 |
gtatacccttaac |
14414300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5082530 - 5082327
Alignment:
| Q |
1 |
cttcaacatctcttctttgagagatatgaaccttggtagtaacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattg |
100 |
Q |
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||||| |||||||||||||||||| || | ||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |
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| T |
5082530 |
cttcagcatctcttctttgagagagatcagccttgatggtaacaatttaaatggaactcttccagacgagatgtgtcatcaacttcctcaacttgaaata |
5082431 |
T |
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| Q |
101 |
ttttttctatacaataattttcttgaaggaaccattccacgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacag |
200 |
Q |
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| T |
5082430 |
tttactctactcggtaatcatttagaaggagccattccacgatcgattggcaactgcacattgttacaaacgttaactttacaggataactttttttcag |
5082331 |
T |
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| Q |
201 |
gtat |
204 |
Q |
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|||| |
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| T |
5082330 |
gtat |
5082327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5099720 - 5099923
Alignment:
| Q |
1 |
cttcaacatctcttctttgagagatatgaaccttggtagtaacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattg |
100 |
Q |
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| T |
5099720 |
cttcaacatctcttctttgagagagatcagccttactaagaacaatttaaatggaagtctcccagacgagatgtgtcttcaacttcctcaactttaatta |
5099819 |
T |
|
| Q |
101 |
ttttttctatacaataattttcttgaaggaaccattccacgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacag |
200 |
Q |
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| T |
5099820 |
ttttctctaaaaagtaatcattttgaaggattcattccaccatcgattggaaactgtacatcattacaaacgttacatttacagaataacttttttacag |
5099919 |
T |
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| Q |
201 |
gtat |
204 |
Q |
| |
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|||| |
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| T |
5099920 |
gtat |
5099923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5117406 - 5117469
Alignment:
| Q |
1 |
cttcaacatctcttctttgagagatatgaaccttggtagtaacaatttaaatggaactcttcca |
64 |
Q |
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| T |
5117406 |
cttcaacatctcttctttgagagtgatcagccttcgtagtaacaatttaaatggaactcttcca |
5117469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 5117465 - 5117534
Alignment:
| Q |
135 |
ttccacgatcgattggcaattgcacatcgttacaaaagttatatttacaaaataacctttttacaggtat |
204 |
Q |
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| T |
5117465 |
ttccacgatcgattggcaactgcacatttttacaaaagttatatttcactaataacttttttacaggtat |
5117534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 1270 - 1395
Alignment:
| Q |
40 |
taacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaacttgaattgttttttctatacaataattttcttgaaggaaccattcca |
139 |
Q |
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| T |
1270 |
taacaatttaaatggaagtctaccaaatgattttttcaatcatcttcctcaacttgaagatttttctttagacaacaatcattttgaaggaagcattcca |
1369 |
T |
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| Q |
140 |
cgatcgattggcaattgcacatcgtt |
165 |
Q |
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| T |
1370 |
cgatcaattggcaactccacatcgtt |
1395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 16877725 - 16877818
Alignment:
| Q |
1 |
cttcaacatctcttctttgagagatatgaaccttggtagtaacaatttaaatggaactcttccagatgagatgtgtaatcaacttcctcaactt |
94 |
Q |
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|||||| ||| |||||||||||||||| ||| ||| | |||||||||||||||| || ||| ||||||||| | ||||||||||||||| |
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| T |
16877725 |
cttcaatatcacttctttgagagatatcaactttgacaaaaacaatttaaatggaaacctcccaccagagatgtgtcaacaacttcctcaactt |
16877818 |
T |
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