View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_high_61 (Length: 250)

Name: NF18054_high_61
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_high_61
NF18054_high_61
[»] chr8 (10 HSPs)
chr8 (1-240)||(13024743-13024982)
chr8 (93-214)||(18096646-18096767)
chr8 (152-217)||(12647160-12647225)
chr8 (152-211)||(12711786-12711845)
chr8 (148-217)||(12652270-12652339)
chr8 (160-220)||(12709892-12709952)
chr8 (154-217)||(6117901-6117964)
chr8 (144-214)||(18082280-18082350)
chr8 (154-211)||(12705780-12705837)
chr8 (162-211)||(22945459-22945508)
[»] chr4 (2 HSPs)
chr4 (93-214)||(37875592-37875713)
chr4 (169-217)||(20426643-20426691)
[»] chr2 (2 HSPs)
chr2 (150-217)||(44912518-44912585)
chr2 (163-217)||(44937794-44937848)
[»] chr1 (4 HSPs)
chr1 (163-221)||(19219179-19219237)
chr1 (163-221)||(19225436-19225494)
chr1 (170-211)||(22535211-22535252)
chr1 (102-222)||(17748092-17748211)
[»] chr3 (1 HSPs)
chr3 (163-220)||(2703738-2703795)
[»] chr7 (1 HSPs)
chr7 (149-221)||(6432600-6432672)
[»] chr5 (1 HSPs)
chr5 (150-226)||(42840501-42840577)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13024982 - 13024743
Alignment:
Q  1 ttatggtgtcgtttgactttagcaaagagacattcgttgcaacaccattaccctctaactcagatataaaatataaacggatgaaaatgggattggtgga 100  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13024982 ttatggtgttgtttgactttaccaaagagacattcgttgcaacaccattaccctctaactcagatataaaatataaacagatgaaaatgggattggtgga 13024883  T
Q  101 attaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaa 200  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13024882 attagatggatctctttcttacatcactaattacaaccagacgcctgattttcacatttgggttttgggtgaactcggtgtcaaagaatcgtggactaaa 13024783  T
Q  201 ttctttgttgtcggacccttaacttgtcctcttatctctg 240  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  13024782 ttctttgttgttggacccttaacttgtcctcttatctctg 13024743  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18096646 - 18096767
Alignment:
Q  93 ttggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgt 192  Q
    |||||||| |||||||  |||||||||  ||||  ||||||| ||  ||| ||||||||||| |||||||||||||||||| | |||||||||||||| |    
T  18096646 ttggtggagttaaatgagtctctttctgtcatctataattacgacaggacgcctgattttcatatttgggttttgggtgaagtgggtgtcaaggaatcat 18096745  T
Q  193 ggactaaattctttgttgtcgg 214  Q
    |||| ||  |||||||||||||    
T  18096746 ggaccaagctctttgttgtcgg 18096767  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 12647160 - 12647225
Alignment:
Q  152 tcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 217  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||||| | |||||||| |||||    
T  12647160 tcacatatgggttttgggtgaacatggtgttaaggaatcgtggactaaactttttgttgttggacc 12647225  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 12711845 - 12711786
Alignment:
Q  152 tcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 211  Q
    |||||| ||| ||||||||||||||||||| || |||||||||| |||| ||||||||||    
T  12711845 tcacatatggattttgggtgaactcggtgttaaagaatcgtggattaaactctttgttgt 12711786  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 12652270 - 12652339
Alignment:
Q  148 attttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 217  Q
    |||||||||| | | ||||||||||| | |||||  ||||||||||||||||| |||||||||| |||||    
T  12652270 attttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacc 12652339  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 12709952 - 12709892
Alignment:
Q  160 gggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctt 220  Q
    ||||||||||| || |  |||||||||||||||||||||||||||| ||| | ||||||||    
T  12709952 gggttttgggttaaattagtgtcaaggaatcgtggactaaattcttcgttcttggaccctt 12709892  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 6117901 - 6117964
Alignment:
Q  154 acatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 217  Q
    |||| ||| ||||||||||||| ||||| || |||||||||| |||| |||||||||| |||||    
T  6117901 acatatggattttgggtgaacttggtgttaaagaatcgtggattaaactctttgttgttggacc 6117964  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 18082280 - 18082350
Alignment:
Q  144 cctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcgg 214  Q
    ||||||||||| ||||||||||||| |||| | ||||| |||||||| ||||| ||  ||||| |||||||    
T  18082280 cctgattttcatatttgggttttggatgaagtgggtgtaaaggaatcatggaccaagctctttattgtcgg 18082350  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 12705780 - 12705837
Alignment:
Q  154 acatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 211  Q
    |||| ||| ||||||||||| ||||||| || |||||||||| |||| ||||||||||    
T  12705780 acatatggattttgggtgaagtcggtgttaaagaatcgtggattaaactctttgttgt 12705837  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 22945459 - 22945508
Alignment:
Q  162 gttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 211  Q
    ||||| |||||||||||| | | |||||||||||||||||| ||||||||    
T  22945459 gttttaggtgaactcggtttgatggaatcgtggactaaattgtttgttgt 22945508  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 37875592 - 37875713
Alignment:
Q  93 ttggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgt 192  Q
    |||||||| |||||||  |||||||||  ||||  ||||||| ||  ||| ||||||||||| || ||||||||||||||| | ||| | |||||||| |    
T  37875592 ttggtggagttaaatgagtctctttctgtcatctataattacgacatgacgcctgattttcatatctgggttttgggtgaagtgggtattaaggaatcat 37875691  T
Q  193 ggactaaattctttgttgtcgg 214  Q
    |||| ||  |||||||||||||    
T  37875692 ggaccaatctctttgttgtcgg 37875713  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 20426643 - 20426691
Alignment:
Q  169 gtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 217  Q
    |||||||||| || |||||||||||||| ||| |||||||||| |||||    
T  20426643 gtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 20426691  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 44912585 - 44912518
Alignment:
Q  150 tttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 217  Q
    |||||||| | | ||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacc 44912518  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 44937848 - 44937794
Alignment:
Q  163 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 217  Q
    |||||||||||||||| || || ||||| ||||||||| |||||||||| |||||    
T  44937848 ttttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggacc 44937794  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 19219237 - 19219179
Alignment:
Q  163 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 221  Q
    |||||||||||||||||||||||||||| ||||||||  |||| | ||| |||||||||    
T  19219237 ttttgggtgaactcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 19219179  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 19225494 - 19225436
Alignment:
Q  163 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 221  Q
    |||||||||| ||||||||||||||||| ||||||||  |||| | ||| |||||||||    
T  19225494 ttttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 19225436  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 22535252 - 22535211
Alignment:
Q  170 tgaactcggtgtcaaggaatcgtggactaaattctttgttgt 211  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||    
T  22535252 tgaactcggtgtcgaggaatcgtgggctaaactctttgttgt 22535211  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 17748092 - 17748211
Alignment:
Q  102 ttaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaat 201  Q
    |||||||| ||| |||||  |||| |||||||  || ||||| || |||||||||| | | ||| |||| ||||| ||||||||||||| |||||||||     
T  17748092 ttaaatgggtctgtttctctcatctctaattattacaagacaacttattttcacatatagattt-gggtcaactctgtgtcaaggaatcatggactaaag 17748190  T
Q  202 tctttgttgtcggacccttaa 222  Q
    | || ||||| ||||| ||||    
T  17748191 ttttcgttgttggaccattaa 17748211  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 2703738 - 2703795
Alignment:
Q  163 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctt 220  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||| ||| | ||||||    
T  2703738 ttttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaaccctt 2703795  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 6432600 - 6432672
Alignment:
Q  149 ttttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 221  Q
    ||||||||| |  |||||| ||||||| |||||||| ||||| ||||| ||| ||||  ||||||||||||||    
T  6432600 ttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggaccctta 6432672  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 42840577 - 42840501
Alignment:
Q  150 tttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacccttaacttg 226  Q
    ||||||||||   ||||||||||||| ||||| || ||||| ||||||||| ||||| |||| || |||||| ||||    
T  42840577 tttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttg 42840501  T

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