View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_68 (Length: 241)
Name: NF18054_high_68
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_68 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 43462624 - 43462848
Alignment:
| Q |
1 |
agatgatgatgtagaggatgtgaggatggagattaagataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattct |
100 |
Q |
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| T |
43462624 |
agatgatgatgtagaggatgtgaggagggaaattaagataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattct |
43462723 |
T |
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| Q |
101 |
gatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttg |
200 |
Q |
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| T |
43462724 |
gatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttg |
43462823 |
T |
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| Q |
201 |
caagaactattgttagtgttgttga |
225 |
Q |
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| T |
43462824 |
caagaactatcgttagtgttgttga |
43462848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 43453190 - 43453409
Alignment:
| Q |
6 |
atgatgtagaggatgtgaggatggagattaagataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgt |
105 |
Q |
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| T |
43453190 |
atgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgt |
43453289 |
T |
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| Q |
106 |
tgtttatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaaga |
205 |
Q |
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| T |
43453290 |
tgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaaga |
43453389 |
T |
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| Q |
206 |
actattgttagtgttgttga |
225 |
Q |
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| T |
43453390 |
acgattgttaatgttgttga |
43453409 |
T |
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