View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_69 (Length: 239)
Name: NF18054_high_69
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 46538457 - 46538249
Alignment:
| Q |
19 |
acaacagatctatataaaaatactatccaatccggtccaataggtaacagtacaaaaatccaaacaaaggaaaatcaagaatgtaactcatcaatacact |
118 |
Q |
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| T |
46538457 |
acaacagatctatataaaaatactatccaatccagtccaataggtaacagtacaaaaatccaaacaaaggaaaatcaagaatgtaactcatcaatacact |
46538358 |
T |
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| Q |
119 |
tatgttcaaacagtgatgaagtagcataaacttcaaaccatacatacaagtacaacaaacacaataataaataaaccatataccattaatagatgctccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46538357 |
tatgttcaaacagtgatgaagtagcataaacttcaaaccatacatacaagtacaacaaacacaataataaataaaccatataccattaatagatgctccc |
46538258 |
T |
|
| Q |
219 |
ttcatctca |
227 |
Q |
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| ||||||| |
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| T |
46538257 |
tccatctca |
46538249 |
T |
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