View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_7 (Length: 629)
Name: NF18054_high_7
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 614
Target Start/End: Original strand, 11889089 - 11889693
Alignment:
| Q |
11 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcagatgaatacaatagaaagacaactgcaatagac |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889089 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcagatgaatacaatagaaagacaactgcaatagac |
11889188 |
T |
|
| Q |
111 |
tggtgttagatttgaatgcctggactaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatttttt-gtatcatct |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11889189 |
tggtgttagatttgaatgcctggactaaagtatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatttttttgtatcatct |
11889288 |
T |
|
| Q |
210 |
atgtataggccattcagtagaaccatgttattgtcatatataaatactagaagnnnnnnnnttcagtagaccaccttggtagaaggtcgactgttggacc |
309 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
11889289 |
atgcataggccattcagtagaaccatgttattgtcatatataaatactagaagaaaaaaaattcagtagaccaccttgatagaaggtcgactgttggacc |
11889388 |
T |
|
| Q |
310 |
gaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgactgagtgggtgaccttatcggtgtcactttgacaaaaata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11889389 |
gaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgactgagtgggtgaccttatcggtgtcactttgacagaaata |
11889488 |
T |
|
| Q |
410 |
tgagttgagttttgagccacacatatctattttatcttgtctgttccaaattgacaccaataaggtcaccatctcagatgttacaataaggaggaatatg |
509 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11889489 |
taagttgagttttgagccacacatatctattttatcttgtttgttccaaattgacaccaataaggtcaccatctcagatgttacaataaggaggaatatg |
11889588 |
T |
|
| Q |
510 |
aaattctactcccgagaaccaatatcagtcattgttgaagtttcaaacgattttcaagtaccgatccacggttgaccgcctattaaaattgtacacctta |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11889589 |
aaattctactcccgagaaccaatatcagtcattgttgaagtttcaaacgattttcaagtaccgatccacggttgaccgcctattaaaattgtacacctta |
11889688 |
T |
|
| Q |
610 |
taact |
614 |
Q |
| |
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||||| |
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|
| T |
11889689 |
taact |
11889693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 271 - 579
Target Start/End: Original strand, 11895982 - 11896289
Alignment:
| Q |
271 |
ttcagtagaccaccttggtagaaggtcgactgttggaccgaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgac |
370 |
Q |
| |
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||||||||| ||||||| ||||||||||||| | | ||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
11895982 |
ttcagtagaacaccttgatagaaggtcgactctag-accagaacctgaaaatttattcaaaacaccaatgacatttgacaggactcatcatccccacgac |
11896080 |
T |
|
| Q |
371 |
tgagtgggtgaccttatcggtgtcactttgacaaaaatatgagttgagttttgagccacacatatctattttatcttgtctgttccaaattgacaccaat |
470 |
Q |
| |
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||||||| ||||||||||||||| | || |||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |
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|
| T |
11896081 |
tgagtggttgaccttatcggtgttagttagacagaaatacgagttgagttttgagccacacatatcaattatatcttgtttgttccaaattgtaaccaat |
11896180 |
T |
|
| Q |
471 |
aaggtcaccatctcagatgttacaataaggaggaatatgaaattctactcccgagaaccaatatcagtcattgttgaagtttcaaacgattttcaagtac |
570 |
Q |
| |
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||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
11896181 |
caggtcactatctcagacgttacaacaaggaggaatatgaaattctactcccgaaaaccaatatcagtcattgctgaagtttcaaacgatttttgagtac |
11896280 |
T |
|
| Q |
571 |
cgatccacg |
579 |
Q |
| |
|
|||||||| |
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|
| T |
11896281 |
tgatccacg |
11896289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 271 - 579
Target Start/End: Original strand, 11901648 - 11901955
Alignment:
| Q |
271 |
ttcagtagaccaccttggtagaaggtcgactgttggaccgaaacctgaaaatttgttcaaaacaccaatgacatctgacgggactcatcatccccacgac |
370 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| | | ||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
11901648 |
ttcagtagaacaccttgatagaaggtcgactctag-accagaacctgaaaatttattcaaaacaccaatgacatttgacaggactcatcatccccacgac |
11901746 |
T |
|
| Q |
371 |
tgagtgggtgaccttatcggtgtcactttgacaaaaatatgagttgagttttgagccacacatatctattttatcttgtctgttccaaattgacaccaat |
470 |
Q |
| |
|
||||||| ||||||||||||||| | || |||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |
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| T |
11901747 |
tgagtggttgaccttatcggtgttagttagacagaaatacgagttgagttttgagccacacatatcaattatatcttgtttgttccaaattgtaaccaat |
11901846 |
T |
|
| Q |
471 |
aaggtcaccatctcagatgttacaataaggaggaatatgaaattctactcccgagaaccaatatcagtcattgttgaagtttcaaacgattttcaagtac |
570 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
11901847 |
caggtcactatctcagacgttacaacaaggaggaatatgaaattctactcccgaaaaccaatatcagtcattgctgaagtttcaaacgatttttgagtac |
11901946 |
T |
|
| Q |
571 |
cgatccacg |
579 |
Q |
| |
|
|||||||| |
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|
| T |
11901947 |
tgatccacg |
11901955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 11895576 - 11895800
Alignment:
| Q |
11 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcaga-tgaata-----caatagaaagacaactgca |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| ||| | || |||||||||| ||||| |||||| |||||||||||||| |||| |
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|
| T |
11895576 |
gatgaaaaccttcacaaagagttaacaatgat-gtggattagcatagcaaattgatataattaatcaccgtgaatataatacaatagaaagacaattgca |
11895674 |
T |
|
| Q |
105 |
atagactggtgttagatttgaatgcctgga--------ctaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
196 |
Q |
| |
|
||| ||||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11895675 |
ataaactggtgttagattttaatgcctggagccctgaactaatgcatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
11895774 |
T |
|
| Q |
197 |
ttttgtatcatctatgtataggccattc |
224 |
Q |
| |
|
||| |||||||||||| |||||||||| |
|
|
| T |
11895775 |
ttt--tatcatctatgtctaggccattc |
11895800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 11901242 - 11901466
Alignment:
| Q |
11 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcaga-tgaata-----caatagaaagacaactgca |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| ||| | || |||||||||| ||||| |||||| |||||||||||||| |||| |
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|
| T |
11901242 |
gatgaaaaccttcacaaagagttaacaatgat-gtggattagcatagcaaattgatataattaatcaccgtgaatataatacaatagaaagacaattgca |
11901340 |
T |
|
| Q |
105 |
atagactggtgttagatttgaatgcctgga--------ctaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
196 |
Q |
| |
|
||| ||||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901341 |
ataaactggtgttagattttaatgcctggagccctgaactaatgcatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
11901440 |
T |
|
| Q |
197 |
ttttgtatcatctatgtataggccattc |
224 |
Q |
| |
|
||| |||||||||||| |||||||||| |
|
|
| T |
11901441 |
ttt--tatcatctatgtctaggccattc |
11901466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 614
Target Start/End: Original strand, 11896336 - 11896365
Alignment:
| Q |
585 |
ccgcctattaaaattgtacaccttataact |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11896336 |
ccgcctattaaaattgtacaccttataact |
11896365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 614
Target Start/End: Original strand, 11902002 - 11902031
Alignment:
| Q |
585 |
ccgcctattaaaattgtacaccttataact |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11902002 |
ccgcctattaaaattgtacaccttataact |
11902031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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