View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_78 (Length: 235)
Name: NF18054_high_78
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 21384879 - 21385080
Alignment:
| Q |
16 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21384879 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtc |
21384978 |
T |
|
| Q |
116 |
ctaaccatatgcagaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcata |
215 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21384979 |
ctaaccatatgcagaaaactcctcctagggtttggaggatccagagtgtccataatcttcctcgcataccgaataatcttgctgcaacatctgatgcata |
21385078 |
T |
|
| Q |
216 |
tc |
217 |
Q |
| |
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|| |
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| T |
21385079 |
tc |
21385080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 21372678 - 21372477
Alignment:
| Q |
16 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21372678 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtc |
21372579 |
T |
|
| Q |
116 |
ctaaccatatgcagaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcata |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21372578 |
ctaaccatatgcagaaaactcctcctagggtttggaggatccagagtgtccatattcttcctcgcattccgaataatcttgctgcaacatctgatgcata |
21372479 |
T |
|
| Q |
216 |
tc |
217 |
Q |
| |
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|| |
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|
| T |
21372478 |
tc |
21372477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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