View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_8 (Length: 624)
Name: NF18054_high_8
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 40228315 - 40227765
Alignment:
| Q |
1 |
gtatgaaattgtcactattaggattttattttctttctttattaatatatatgaaatggagtatattttgcatnnnnnnnnttattacttttcgttttgt |
100 |
Q |
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| T |
40228315 |
gtatgaaattgtcactattaggattttattttctttctttattattatatatgaaatggagtatattttgcataaaaaaaattattacttttcgttttgt |
40228216 |
T |
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| Q |
101 |
ttaatgattatcttagttttttgttgtcacttagatggattgggtgatataggcttgatccttagaatcttatgtaactattgagagcatgccacaaaga |
200 |
Q |
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| T |
40228215 |
ttaatgattatcttagttttttgttgtcacttagatggattaggtgatataggcttgatccttagaatcttatgtaactattgagagcatgccacaaaga |
40228116 |
T |
|
| Q |
201 |
cagtaaactacatcgtgagcatgacactttgtcttaatagctctaaatcttaacttgttctaaaaaggggcacacacttagtccattttaaccttgaatc |
300 |
Q |
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| T |
40228115 |
cagtaaactacatcgtgagcatgacactttgtcttaatagctctaaatcttaacttgttctaaaaaggggcacacacttagtccattttaaccttgaatc |
40228016 |
T |
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| Q |
301 |
tgaatgatatagatagtaaagatggctaattaaatatggattttacatataaataaatggattttctttatattttaattttagccaaactttgacattg |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40228015 |
tgaatgatatagatagcaaagatggctaattaaatatggattttacatataaataaatggattttctttatattttaattttagccaaactttgaccttg |
40227916 |
T |
|
| Q |
401 |
caaacaaacttggcacgtgttgaacccaaatcttaggaaattcacgtagctaggtgtgagtgagatcatcactaattttacaatacaaactctacttttt |
500 |
Q |
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| T |
40227915 |
caaacaaacttggcacgtgttgaacccaaatcttaggaaattcacgtagctaggtgtgagtgagatcatcactaattttacaatacaaactctacttttt |
40227816 |
T |
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| Q |
501 |
ctcttgaaaatatttttagttacagtgaattagcttctcctctagccatgg |
551 |
Q |
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| T |
40227815 |
ctcttgaaaatatttttagttacagtgaattagcttctcctctagccatgg |
40227765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 40227735 - 40227689
Alignment:
| Q |
561 |
ctttcatgttaaatatgtgtatatccttttttattcttgatccttca |
607 |
Q |
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| T |
40227735 |
ctttcatgttaaatatgtgtatatccttttttattcttgatccttca |
40227689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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