View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_80 (Length: 231)
Name: NF18054_high_80
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_80 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 16224338 - 16224520
Alignment:
| Q |
11 |
gaagaatatcagtctcccttttgtgtcatgtgaaaaggtcataaaataatggaaacatggaaataagaatgaactcttctaattggtaagtgttttatat |
110 |
Q |
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| T |
16224338 |
gaagcatatcagtctcccttttgtgtcatgtgaaaaggtcataaaataatggaaacatggaaataagaatgaactcttctaattggtaagttttttatat |
16224437 |
T |
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| Q |
111 |
gacctctttattaagcattatacagaggcaaacaatatttatatgtacttaagagacatttaataataattctaattttaaga |
193 |
Q |
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| T |
16224438 |
gacctctttattaagcattatacagaggcaaacaatatttgtatgtacttaagagacatttaataataattcctattttaaga |
16224520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 19711185 - 19711025
Alignment:
| Q |
25 |
tcccttttgtgtcatgtgaaaaggtcataaaataatggaaac-atggaaataagaatgaactcttctaattggtaagtgt-tttatatgacctctttatt |
122 |
Q |
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| T |
19711185 |
tcccttttgtgtcttgcgaaaaggttataaaataatggaaactttgaaaataagattaaattattctgattagtaagtttatttacgtgacctctttatt |
19711086 |
T |
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| Q |
123 |
aagcattatacagaggcaaaca--atatttatatgtacttaagagacatttaataataatt |
181 |
Q |
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| T |
19711085 |
aagcttgctaaacgggtaaacacgatagtttgatgtacttaagagacatttaataataatt |
19711025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 28556796 - 28556641
Alignment:
| Q |
29 |
ttttgtgtcatgtgaaaaggtcataaaataatggaaacatggaaa-taagaatgaactcttctaattggtaagtgttttatatgacctctttattaagca |
127 |
Q |
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| T |
28556796 |
ttttgtgtcttttgaaaaggtcatataataatgaaaacttggaaagtaagaatgaattcttatgattggtaagttttttatacgacctctttattaacca |
28556697 |
T |
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| Q |
128 |
ttatacagaggcaaaca--atatttatatgtacttaagagacatttaataataatt |
181 |
Q |
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| T |
28556696 |
ttctaatggggaaaacaagatattttgttgtacttaagagatatttaataataatt |
28556641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 28556130 - 28555978
Alignment:
| Q |
42 |
gaaaaggtcataaaataatggaaacatggaaa-taagaatgaactcttctaattggtaagtgttttatatgacctctttattaagcattatacagaggca |
140 |
Q |
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| T |
28556130 |
gaaaaggttataaaataatggaaacttgaaaaataaaaatgaatttttatgattggtaagttttttatgggacctctttattaagcatgttaaaaaggca |
28556031 |
T |
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| Q |
141 |
aacaatat--ttatatgtacttaagagacatttaataataattctaattttaa |
191 |
Q |
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| T |
28556030 |
aacaaaatactttgatgtacttaagagacattttataataattcctattttaa |
28555978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 28551799 - 28551629
Alignment:
| Q |
25 |
tcccttttgtgtcatgtgaaaaggtcataaaataatggaaacatggaaa----taagaatgaactcttctaattggtaagtgttttatatgacctcttta |
120 |
Q |
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| T |
28551799 |
tcccttttgtgtcgtacgaaaaggttataaaataatgaaaacttgaaaaataataagaatgaattttcataattggtaagt-ttttatgcgacctct--a |
28551703 |
T |
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| Q |
121 |
ttaagcattatacagaggcaaacaatatttat-atgtacttaagagacatttaataataattctaattttaaga |
193 |
Q |
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| T |
28551702 |
ttaagcatgctaaaggagcaaacaaaacatttgatgtaattaagagacatttaataataattcatattttaaga |
28551629 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 25409811 - 25409843
Alignment:
| Q |
153 |
atgtacttaagagacatttaataataattctaa |
185 |
Q |
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| T |
25409811 |
atgtacttaagagacatttaataataattctaa |
25409843 |
T |
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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 12493 - 12441
Alignment:
| Q |
73 |
ataagaatgaactcttctaattggtaagtgttttatatgacctctttattaag |
125 |
Q |
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| T |
12493 |
ataagaatgaattcttataattggtaagttttttatttgacctcgttactaag |
12441 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 16423781 - 16423729
Alignment:
| Q |
73 |
ataagaatgaactcttctaattggtaagtgttttatatgacctctttattaag |
125 |
Q |
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| T |
16423781 |
ataagaatgaattcttataattggtaagttttttatttgacctcgttactaag |
16423729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 1933055 - 1933019
Alignment:
| Q |
156 |
tacttaagagacatttaataataattctaattttaag |
192 |
Q |
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| T |
1933055 |
tacttaagagacacttactaataattctaattttaag |
1933019 |
T |
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