View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_high_81 (Length: 231)

Name: NF18054_high_81
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_high_81
NF18054_high_81
[»] chr1 (2 HSPs)
chr1 (1-231)||(3429010-3429240)
chr1 (6-213)||(3425546-3425756)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3429240 - 3429010
Alignment:
Q  1 cctacgaagagaaggtccttgtaattatggctgggaatgagaaaccaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3429240 cctacgaagagaaggtccttgtaattatggctgggaatgagaaaccaacattcttggctacccctgtagttttttccatcattgacaaagatattgacaa 3429141  T
Q  101 ccttgtacttgttccaactacttccacttcacaagaaaatgaaggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429140 ccttgtacttgttccaactacttccacttcacaagaaaatgaaggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagt 3429041  T
Q  201 aaaatcatgtggtggatactagtggtaggtg 231  Q
    ||||||||||||| |||||||||||||||||    
T  3429040 aaaatcatgtggtagatactagtggtaggtg 3429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 3425756 - 3425546
Alignment:
Q  6 gaagagaaggtccttgtaattatggctgggaatgagaaaccaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttg 105  Q
    ||||||||  ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  3425756 gaagagaatatccttgtcattatggctggtaatgagaacccaacattcttggctacccctgtagttttgtccatcattaacaatgaaattgacaaccttg 3425657  T
Q  106 tacttgttccaactacttccacttcacaagaaaatga---aggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaa 202  Q
    ||||||||||| |||||||||||||||||||||||||   ||||||||| |||||||||||||| || ||||||||||||| || |||||| ||| ||||    
T  3425656 tacttgttccagctacttccacttcacaagaaaatgaagtaggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaa 3425557  T
Q  203 aatcatgtggt 213  Q
    | |||||||||    
T  3425556 agtcatgtggt 3425546  T

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