View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_high_87 (Length: 213)

Name: NF18054_high_87
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_high_87
NF18054_high_87
[»] chr3 (18 HSPs)
chr3 (19-70)||(49968952-49969003)
chr3 (103-156)||(14293685-14293738)
chr3 (103-156)||(14299312-14299365)
chr3 (104-161)||(16829113-16829170)
chr3 (104-161)||(16837635-16837692)
chr3 (104-156)||(16382057-16382109)
chr3 (104-161)||(14651885-14651942)
chr3 (104-156)||(13910512-13910564)
chr3 (104-156)||(13940968-13941020)
chr3 (104-156)||(13947457-13947509)
chr3 (103-161)||(11964082-11964140)
chr3 (104-161)||(13202710-13202767)
chr3 (29-69)||(9511010-9511050)
chr3 (29-69)||(9518985-9519025)
chr3 (104-156)||(12201182-12201234)
chr3 (24-70)||(14641642-14641688)
chr3 (29-70)||(11563642-11563683)
chr3 (105-161)||(11939056-11939112)
[»] scaffold0239 (2 HSPs)
scaffold0239 (104-161)||(13634-13691)
scaffold0239 (104-161)||(6351-6408)
[»] chr7 (19 HSPs)
chr7 (103-156)||(35961879-35961932)
chr7 (104-161)||(15339804-15339861)
chr7 (106-161)||(14287262-14287317)
chr7 (103-156)||(11219274-11219327)
chr7 (29-70)||(15140131-15140172)
chr7 (104-161)||(15722353-15722410)
chr7 (103-156)||(17181857-17181910)
chr7 (104-161)||(19600777-19600834)
chr7 (106-161)||(14280796-14280851)
chr7 (31-69)||(8135331-8135369)
chr7 (103-161)||(14129178-14129236)
chr7 (103-161)||(14136024-14136082)
chr7 (103-161)||(14432996-14433054)
chr7 (29-70)||(15095730-15095771)
chr7 (104-156)||(23200641-23200693)
chr7 (104-156)||(23506768-23506820)
chr7 (29-72)||(708521-708564)
chr7 (35-69)||(17070384-17070418)
chr7 (29-70)||(13132414-13132455)
[»] chr4 (14 HSPs)
chr4 (103-156)||(16999309-16999362)
chr4 (103-156)||(14487570-14487623)
chr4 (104-161)||(14507177-14507234)
chr4 (104-161)||(23723937-23723994)
chr4 (104-156)||(43284045-43284097)
chr4 (106-156)||(40909384-40909434)
chr4 (24-70)||(9638922-9638968)
chr4 (103-156)||(11170389-11170442)
chr4 (104-161)||(23122582-23122639)
chr4 (103-156)||(41528234-41528287)
chr4 (104-156)||(16445907-16445959)
chr4 (104-156)||(20941242-20941294)
chr4 (104-156)||(634905-634957)
chr4 (103-159)||(49051932-49051988)
[»] chr1 (14 HSPs)
chr1 (103-156)||(23065826-23065879)
chr1 (103-161)||(20595255-20595313)
chr1 (104-161)||(3705909-3705966)
chr1 (103-156)||(20243518-20243571)
chr1 (104-156)||(954237-954289)
chr1 (24-70)||(8276083-8276129)
chr1 (106-156)||(22434104-22434154)
chr1 (24-70)||(38056766-38056812)
chr1 (29-75)||(51324422-51324468)
chr1 (103-156)||(19777804-19777857)
chr1 (104-156)||(27281174-27281226)
chr1 (24-70)||(4595939-4595985)
chr1 (29-70)||(7320687-7320728)
chr1 (29-70)||(44822114-44822155)
[»] scaffold0348 (2 HSPs)
scaffold0348 (104-156)||(3908-3960)
scaffold0348 (104-156)||(14654-14706)
[»] scaffold0848 (1 HSPs)
scaffold0848 (19-70)||(2114-2165)
[»] chr6 (13 HSPs)
chr6 (19-69)||(19401002-19401052)
chr6 (103-156)||(22907886-22907939)
chr6 (104-156)||(933652-933704)
chr6 (104-156)||(19727588-19727640)
chr6 (104-161)||(21723896-21723953)
chr6 (104-156)||(33681397-33681449)
chr6 (103-161)||(19819850-19819908)
chr6 (104-161)||(1593711-1593768)
chr6 (103-156)||(2709331-2709384)
chr6 (29-70)||(28948492-28948533)
chr6 (29-73)||(18585723-18585767)
chr6 (29-70)||(23501589-23501630)
chr6 (29-69)||(19825581-19825621)
[»] scaffold0101 (1 HSPs)
scaffold0101 (103-156)||(5923-5976)
[»] scaffold0023 (1 HSPs)
scaffold0023 (103-156)||(19658-19711)
[»] scaffold0005 (2 HSPs)
scaffold0005 (104-161)||(259655-259712)
scaffold0005 (104-161)||(266070-266127)
[»] chr8 (12 HSPs)
chr8 (103-156)||(22056700-22056753)
chr8 (104-156)||(22178569-22178621)
chr8 (103-156)||(22024725-22024778)
chr8 (104-156)||(1803655-1803707)
chr8 (104-156)||(9272325-9272377)
chr8 (35-70)||(20022126-20022161)
chr8 (29-75)||(22532220-22532266)
chr8 (29-75)||(22536905-22536951)
chr8 (103-159)||(19860495-19860551)
chr8 (103-156)||(22062728-22062781)
chr8 (29-66)||(22318008-22318045)
chr8 (29-70)||(45469313-45469354)
[»] chr5 (9 HSPs)
chr5 (104-161)||(22499713-22499770)
chr5 (104-156)||(20938576-20938628)
chr5 (104-156)||(22311975-22312027)
chr5 (112-161)||(757440-757489)
chr5 (104-156)||(17263937-17263989)
chr5 (104-156)||(17270419-17270471)
chr5 (104-156)||(22175987-22176039)
chr5 (29-75)||(30138062-30138108)
chr5 (100-159)||(598144-598203)
[»] chr2 (6 HSPs)
chr2 (104-161)||(2106549-2106606)
chr2 (103-156)||(19702630-19702683)
chr2 (29-69)||(3539754-3539794)
chr2 (28-70)||(25142120-25142162)
chr2 (29-70)||(357799-357840)
chr2 (29-70)||(1383636-1383677)
[»] scaffold0071 (1 HSPs)
scaffold0071 (104-156)||(50112-50164)
[»] scaffold0518 (1 HSPs)
scaffold0518 (103-156)||(8449-8502)
[»] scaffold0158 (1 HSPs)
scaffold0158 (103-152)||(15372-15421)
[»] scaffold1508 (1 HSPs)
scaffold1508 (104-156)||(1545-1597)
[»] scaffold0213 (1 HSPs)
scaffold0213 (104-156)||(1-53)
[»] scaffold0114 (1 HSPs)
scaffold0114 (104-156)||(42896-42948)
[»] scaffold0706 (1 HSPs)
scaffold0706 (103-161)||(2509-2567)
[»] scaffold0220 (1 HSPs)
scaffold0220 (24-70)||(13861-13907)
[»] scaffold0506 (1 HSPs)
scaffold0506 (103-156)||(9192-9245)
[»] scaffold0600 (1 HSPs)
scaffold0600 (104-156)||(48-100)
[»] scaffold0230 (1 HSPs)
scaffold0230 (29-73)||(6775-6819)
[»] scaffold0063 (2 HSPs)
scaffold0063 (104-156)||(25192-25244)
scaffold0063 (104-156)||(14990-15042)
[»] scaffold0039 (1 HSPs)
scaffold0039 (104-156)||(95729-95781)
[»] scaffold0035 (1 HSPs)
scaffold0035 (107-155)||(346-394)
[»] scaffold0328 (1 HSPs)
scaffold0328 (35-70)||(18735-18770)
[»] scaffold0175 (1 HSPs)
scaffold0175 (29-68)||(8559-8598)
[»] scaffold0405 (2 HSPs)
scaffold0405 (103-161)||(2453-2511)
scaffold0405 (103-161)||(11161-11219)
[»] scaffold0430 (1 HSPs)
scaffold0430 (104-161)||(13710-13767)
[»] scaffold0065 (1 HSPs)
scaffold0065 (124-156)||(26917-26949)
[»] scaffold0028 (1 HSPs)
scaffold0028 (29-73)||(3142-3186)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 49969003 - 49968952
Alignment:
Q  19 aatgaattacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49969003 aatgaattagctactattaaatcaaccaattacaacttataaacctaattcc 49968952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 14293685 - 14293738
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  14293685 tcaaaatcagaattcagaatctatacaattgcagtaaacctcacccttacctta 14293738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 14299312 - 14299365
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  14299312 tcaaaatcagaattcagaatctatacaattgcagtaaacctcacccttacctta 14299365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 16829170 - 16829113
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  16829170 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 16829113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 16837692 - 16837635
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  16837692 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 16837635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 16382109 - 16382057
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  16382109 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 16382057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 14651942 - 14651885
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||| |||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  14651942 caaaattagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 14651885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 13910512 - 13910564
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  13910512 caaaatcagaattcagaacctatagaattgcggtaaacctcacccttacctta 13910564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 13940968 - 13941020
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  13940968 caaaatcagaattcagaacctatagaattgcggtaaacctcacccttacctta 13941020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 13947457 - 13947509
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  13947457 caaaatcagaattcagaacctatagaattgcggtaaacctcacccttacctta 13947509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 11964140 - 11964082
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||||||| ||  || ||||||| |||||||||||||||||||||| ||||    
T  11964140 tcaaaatcagaattcagaatctacacaattgaagtaaacctcacccttaccttagtttt 11964082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 13202767 - 13202710
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||  ||||| ||||||||||||||||||||| ||||    
T  13202767 caaaatcagaattcagaacctataagattgcggtaaacctcacccttaccttagtttt 13202710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 9511050 - 9511010
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattc 69  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  9511050 ctactattaaaacaaccaattacaacttctaaacctaattc 9511010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 9519025 - 9518985
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattc 69  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  9519025 ctactattaaaacaaccaattacaacttctaaacctaattc 9518985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 12201182 - 12201234
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  12201182 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 12201234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 14641688 - 14641642
Alignment:
Q  24 attacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| ||||| |||||||||| ||||||||||| |||||||||||||    
T  14641688 attatctactcttaaatcaacaaattacaacttctaaacctaattcc 14641642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 11563642 - 11563683
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||| |||| ||||||||||||||||| |||||||||||||    
T  11563642 ctactcttaattcaaccaattacaacttttaaacctaattcc 11563683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 11939112 - 11939056
Alignment:
Q  105 aaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||||| ||  || ||||||| ||||||||||||||||| |||| ||||    
T  11939112 aaaatcagaattcagaatctacacaattgaagtaaacctcacccttaacttagtttt 11939056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 13691 - 13634
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  13691 caaaatcagaattcagaacctatacaattgcagtaaacctcacccttaccttagtttt 13634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 6408 - 6351
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||| |||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  6408 caaaattagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 6351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 35961932 - 35961879
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  35961932 tcaaaatcagaattcagaacctatacaattgcagtaaacctcacccttacctta 35961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 15339804 - 15339861
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  15339804 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 15339861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 14287317 - 14287262
Alignment:
Q  106 aaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  14287317 aaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 14287262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 11219327 - 11219274
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||| |||||||    
T  11219327 tcaaaatcagaattcagaatctatacaattgcagtaaacctcacccctacctta 11219274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 15140131 - 15140172
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  15140131 ctactattaaatcaaccaattacaacttttaaacctaattcc 15140172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 15722410 - 15722353
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||  ||||||||||| ||||||||||||||||||||| ||||    
T  15722410 caaaatcagaattcagaatctatacaattgcggtaaacctcacccttaccttagtttt 15722353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 17181910 - 17181857
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  17181910 tcaaaatcagaattcagaatctatacaattgcggtaaacctcacccttacctta 17181857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 19600777 - 19600834
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||    
T  19600777 caaaatcagaattcagaacctacacaattgcggtaaacctcacccttaccttagtttt 19600834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 14280851 - 14280796
Alignment:
Q  106 aaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||||||| ||||    
T  14280851 aaatcagaattcagaacctatacaattgcggtcaacctcacccttaccttagtttt 14280796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 8135369 - 8135331
Alignment:
Q  31 actattaaatcaaccaattacaacttataaacctaattc 69  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  8135369 actattaaatcaaccaattacaacttctaaacctaattc 8135331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 14129178 - 14129236
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||||| ||||    
T  14129178 tcaaaatcagaactcagaacctatacaattgcggtaaatctcacccttaccttagtttt 14129236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 14136024 - 14136082
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||||| ||||    
T  14136024 tcaaaatcagaactcagaacctatacaattgcggtaaatctcacccttaccttagtttt 14136082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 14432996 - 14433054
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||||| ||||    
T  14432996 tcaaaatcagaactcagaacctatacaattgcggtaaatctcacccttaccttagtttt 14433054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 15095771 - 15095730
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  15095771 ctactattaaatcaactaattacaacttctaaacctaattcc 15095730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 23200693 - 23200641
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  23200693 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 23200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 23506820 - 23506768
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  23506820 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 23506768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 708564 - 708521
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattccta 72  Q
    |||| |||||| |||||||||||||||| |||||||||||||||    
T  708564 ctacaattaaaacaaccaattacaacttctaaacctaattccta 708521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 17070418 - 17070384
Alignment:
Q  35 ttaaatcaaccaattacaacttataaacctaattc 69  Q
    |||||||||||||||||||||| ||||||||||||    
T  17070418 ttaaatcaaccaattacaacttctaaacctaattc 17070384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 13132455 - 13132414
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  13132455 ctactcttaaatcaaccgattacaacttctaaacctaattcc 13132414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 16999362 - 16999309
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  16999362 tcaaaatcagaattcataacctatacaattgcggtaaacctcacccttacctta 16999309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 14487570 - 14487623
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  14487570 tcaaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 14487623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 14507177 - 14507234
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  14507177 caaaattagaattcataacctatacaattgcggtaaacctcacccttaccttagtttt 14507234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 23723994 - 23723937
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  23723994 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 23723937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 43284097 - 43284045
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  43284097 caaaatcagaatttagaacctatacaattgcagtaaacctcacccttacctta 43284045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 40909384 - 40909434
Alignment:
Q  106 aaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  40909384 aaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 40909434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 9638922 - 9638968
Alignment:
Q  24 attacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  9638922 attatctactcttaaatcaaccaattacaacttctaaacctaattcc 9638968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 11170442 - 11170389
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||| | ||  ||||||||||| |||||||||||||||||||||    
T  11170442 tcaaaatcagaatttagaatctatacaattgcggtaaacctcacccttacctta 11170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 23122582 - 23122639
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||  |||| |||||| ||||||||||||||||||||| ||||    
T  23122582 caaaatcagaattcagaatctatataattgcggtaaacctcacccttaccttagtttt 23122639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 41528287 - 41528234
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  41528287 tcaaaatcagaattcagaatcaatacaattgaagtaaacctcacccttacctta 41528234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 16445907 - 16445959
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  16445907 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 16445959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 20941242 - 20941294
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  20941242 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 20941294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 634957 - 634905
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||| ||||||||    
T  634957 caaaatcagaattcagaacctataagattgcggtaaacctcacctttacctta 634905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 49051932 - 49051988
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatt 159  Q
    ||||||||||||||||  || ||||| | || |||||| ||||||||||||||||||    
T  49051932 tcaaaatcagaattcaatacctatactactgaagtaaaactcacccttaccttaatt 49051988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 23065879 - 23065826
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  23065879 tcaaaatcagaattcagaacctatacaattgcagtaaacctcacccttacctta 23065826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 20595313 - 20595255
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||    
T  20595313 tcaaaatcagaattcagaacctaaacaattgcggtaaacctcacccttaccttagtttt 20595255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 3705966 - 3705909
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| |||| |||||| ||||||||||||||||||||| ||||    
T  3705966 caaaatcagaattcagaacctatataattgcggtaaacctcacccttaccttagtttt 3705909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 20243518 - 20243571
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  20243518 tcaaaatcagaattcagaatctatacaattgcggtaaacctcacccttacctta 20243571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 954289 - 954237
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||    
T  954289 caaaatcagaatttagaacctatacaattgcggtaaacctcacccttacctta 954237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 8276129 - 8276083
Alignment:
Q  24 attacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  8276129 attatctactcttaaatcaaccaattacaacttctaaacctaattcc 8276083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 22434154 - 22434104
Alignment:
Q  106 aaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  22434154 aaatcagaattcagaatctatacaattgcggtaaacctcacccttacctta 22434104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 38056812 - 38056766
Alignment:
Q  24 attacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  38056812 attatctactcttaaatcaaccaattacaacttctaaacctaattcc 38056766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 51324422 - 51324468
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaatt 75  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||||    
T  51324422 ctactattaaaacaaccaattacaacttttaaacctaattcccaatt 51324468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 19777857 - 19777804
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  19777857 tcaaaatcagaattcagaatcaatacaattgaagtaaacctcacccttacctta 19777804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 27281174 - 27281226
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  27281174 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 27281226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 4595985 - 4595939
Alignment:
Q  24 attacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  4595985 attatctactcttaaatcaaccaattacaacttctaaatctaattcc 4595939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 7320728 - 7320687
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||||||||||||||||||||||||| | ||||| |||||||    
T  7320728 ctactattaaatcaaccaattacaacatctaaacataattcc 7320687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 44822155 - 44822114
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| |||||| |||||||||||||||| |||||||||||||    
T  44822155 ctacaattaaaacaaccaattacaacttctaaacctaattcc 44822114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 3960 - 3908
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  3960 caaaatcagaattcagaacatatacaattgcggtaaacctcacccttacctta 3908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 14706 - 14654
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  14706 caaaatcagaattcagaacctatacaattgcagtaaacctcacccttacctta 14654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0848 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2165 - 2114
Alignment:
Q  19 aatgaattacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  2165 aatgaattagctactattaaaccaaccaattacaacttataaacctaattcc 2114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 19401002 - 19401052
Alignment:
Q  19 aatgaattacctactattaaatcaaccaattacaacttataaacctaattc 69  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  19401002 aatgaattagctactattaaatcaaacaattacaacttataaacctaattc 19401052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 22907886 - 22907939
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  22907886 tcaaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 22907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 933704 - 933652
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  933704 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 933652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 19727588 - 19727640
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  19727588 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 19727640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 21723953 - 21723896
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||| |||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  21723953 caaaattagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 21723896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 33681449 - 33681397
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  33681449 caaaatcagaattcagaacctatagaattgcggtaaacctcacccttacctta 33681397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 19819850 - 19819908
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||||||| ||  || ||||||| |||||||||||||||||||||| ||||    
T  19819850 tcaaaatcagaattcagaatctacacaattgaagtaaacctcacccttaccttagtttt 19819908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 1593711 - 1593768
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||| |||||||| ||  ||||||||||| ||||||||||||||||||||| ||||    
T  1593711 caaaattagaattcagaatctatacaattgcggtaaacctcacccttaccttagtttt 1593768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 2709331 - 2709384
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  2709331 tcaaaatcagaattcagaattaatacaattgaagtaaacctcacccttacctta 2709384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 28948492 - 28948533
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  28948492 ctactattaaaacaaccaattacaacttctaaacctaattcc 28948533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 18585723 - 18585767
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaa 73  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||    
T  18585723 ctacaattaaaacaaccaattacaacttctaaacctaattcctaa 18585767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 23501589 - 23501630
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||| |||||||||| ||||||||||| |||||||||||||    
T  23501589 ctacttttaaatcaacaaattacaacttctaaacctaattcc 23501630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 19825621 - 19825581
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattc 69  Q
    ||||| |||||||||||||||||||||| ||||| ||||||    
T  19825621 ctactcttaaatcaaccaattacaacttctaaacataattc 19825581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 5976 - 5923
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  5976 tcaaaatcagaattcaaaacctatacaattgcggtaaacctcacccttacctta 5923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 19711 - 19658
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  19711 tcaaaatcagaattcagaatctatacaattgcagtaaacctcacccttacctta 19658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 259655 - 259712
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  259655 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 259712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 266070 - 266127
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  266070 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 266127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 22056700 - 22056753
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  22056700 tcaaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 22056753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 22178569 - 22178621
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  22178569 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 22178621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 22024778 - 22024725
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  22024778 tcaaaatcagaattcagaatctatacaattgcggtaaacctcacccttacctta 22024725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 1803707 - 1803655
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  1803707 caaaatcagaattcagaacctatagaattgcggtaaacctcacccttacctta 1803655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 9272377 - 9272325
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  9272377 caaaatcagaattcagaacctataaaattgcggtaaacctcacccttacctta 9272325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 20022161 - 20022126
Alignment:
Q  35 ttaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  20022161 ttaaatcaaccaattacaacttctaaacctaattcc 20022126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 22532266 - 22532220
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaatt 75  Q
    ||||||||||| ||| |||||||||||| ||||||||||||| ||||    
T  22532266 ctactattaaaacaatcaattacaacttttaaacctaattcccaatt 22532220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 22536951 - 22536905
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaatt 75  Q
    ||||||||||| ||| |||||||||||| ||||||||||||| ||||    
T  22536951 ctactattaaaacaatcaattacaacttttaaacctaattcccaatt 22536905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 19860495 - 19860551
Alignment:
Q  103 tcaaaatcagaattc-ataacatatacaattgcagtaaacctcacccttaccttaatt 159  Q
    ||||||||||||||| ||||| ||||| |||| || ||||||||||||||||||||||    
T  19860495 tcaaaatcagaattcaataac-tatactattgaagcaaacctcacccttaccttaatt 19860551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 22062781 - 22062728
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||| |||||| ||  ||||||||||  |||||||||||||||||||||    
T  22062781 tcaaaatcataattcagaatctatacaattgtggtaaacctcacccttacctta 22062728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 22318045 - 22318008
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaa 66  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  22318045 ctactattaaaccaaccaattacaacttctaaacctaa 22318008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 45469354 - 45469313
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    ||||| |||||||||||||||||||||| ||||| |||||||    
T  45469354 ctactcttaaatcaaccaattacaacttctaaacataattcc 45469313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 22499770 - 22499713
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  22499770 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 22499713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 20938576 - 20938628
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  20938576 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 20938628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 22312027 - 22311975
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  22312027 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 22311975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 757489 - 757440
Alignment:
Q  112 gaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  757489 gaattcagaacctatacaattgcggtaaacctcacccttaccttagtttt 757440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 17263989 - 17263937
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  17263989 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 17263937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 17270471 - 17270419
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  17270471 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 17270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 22175987 - 22176039
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  22175987 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 22176039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 30138108 - 30138062
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaatt 75  Q
    |||| |||||| |||||||||||||||| ||||||||||||| ||||    
T  30138108 ctacaattaaaacaaccaattacaacttctaaacctaattcccaatt 30138062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 598144 - 598203
Alignment:
Q  100 aattcaaaatcagaattca-taacatatacaattgcagtaaacctcacccttaccttaatt 159  Q
    ||||||||||||||| ||| |||| || || |||| |||||||||||||||||||||||||    
T  598144 aattcaaaatcagaaatcaataac-tacactattgaagtaaacctcacccttaccttaatt 598203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 2106549 - 2106606
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  2106549 caaaattagaattcagaacctatacaattgcggtaaacctcacccttaccttaatttt 2106606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 19702683 - 19702630
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||  || ||||||| ||||||||||||||||||||||    
T  19702683 tcaaaatcagaattcagaatctacacaattgaagtaaacctcacccttacctta 19702630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3539754 - 3539794
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattc 69  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  3539754 ctactcttaaatcaaccaattacaacttctaaacctaattc 3539794  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 25142120 - 25142162
Alignment:
Q  28 cctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||||| |||| ||||||||||||||||| |||||||||||||    
T  25142120 cctactcttaattcaaccaattacaacttctaaacctaattcc 25142162  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 357799 - 357840
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| |||||| |||||||||||||||| |||||||||||||    
T  357799 ctacaattaaaacaaccaattacaacttctaaacctaattcc 357840  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 1383677 - 1383636
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| |||||| |||||||||||||||| |||||||||||||    
T  1383677 ctacaattaaaacaaccaattacaacttctaaacctaattcc 1383636  T

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Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 50164 - 50112
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  50164 caaaatcagaattcagaacctatacaattgcggtaaacctcacccttacctta 50112  T

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Target: scaffold0518 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 8449 - 8502
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||| ||||||||||  |||||||||||||||||||||    
T  8449 tcaaaatcagaattcagaacctatacaattggggtaaacctcacccttacctta 8502  T

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Target: scaffold0158 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 15372 - 15421
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttac 152  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  15372 tcaaaatcagaattcagaacctatacaattgcggtaaacctcacccttac 15421  T

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Target: scaffold1508 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1508
Description:

Target: scaffold1508; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 1597 - 1545
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||    
T  1597 caaaatctgaattcataacctatacaattgcggtaaacttcacccttacctta 1545  T

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Target: scaffold0213 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 1 - 53
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||    
T  1 caaaatcagaatttagaacctatacaattgcggtaaacctcacccttacctta 53  T

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Target: scaffold0114 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 42896 - 42948
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||| || ||| ||||||||||| |||||||||||||||||||||    
T  42896 caaaatcagaatccagaacctatacaattgcggtaaacctcacccttacctta 42948  T

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Target: scaffold0706 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0706
Description:

Target: scaffold0706; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 2567 - 2509
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||||||||||| ||  || ||||||| |||||||||||||||||||||| ||||    
T  2567 tcaaaatcagaattcagaatctacacaattgaagtaaacctcacccttaccttagtttt 2509  T

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Target: scaffold0220 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 13861 - 13907
Alignment:
Q  24 attacctactattaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  13861 attatctactcttaaatcaaccaattacaacttctaaacctaattcc 13907  T

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Target: scaffold0506 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 9192 - 9245
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  9192 tcaaaatcagaattcagaatcaatacaattgaagtaaacctcacccttacctta 9245  T

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Target: scaffold0600 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 48 - 100
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  48 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 100  T

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Target: scaffold0230 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 6819 - 6775
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaa 73  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||    
T  6819 ctacaattaaaacaaccaattacaacttctaaacctaattcctaa 6775  T

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Target: scaffold0063 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 25192 - 25244
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  25192 caaaatcagaattcagaacctataagattgcggtaaacctcacccttacctta 25244  T

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Target: scaffold0063; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 14990 - 15042
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    |||| |||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  14990 caaagtcagaattcagaacctataagattgcggtaaacctcacccttacctta 15042  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 95729 - 95781
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||    
T  95729 caaaatcagaattcagaacgtataagattgcggtaaacctcacccttacctta 95781  T

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Target: scaffold0035 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 346 - 394
Alignment:
Q  107 aatcagaattcataacatatacaattgcagtaaacctcacccttacctt 155  Q
    |||||||||||| ||  |||| |||||||||||||||||||||||||||    
T  346 aatcagaattcagaatctatagaattgcagtaaacctcacccttacctt 394  T

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Target: scaffold0328 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 18770 - 18735
Alignment:
Q  35 ttaaatcaaccaattacaacttataaacctaattcc 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  18770 ttaaatcaaccaattacaacttctaaacctaattcc 18735  T

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Target: scaffold0175 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 8559 - 8598
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaatt 68  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  8559 ctactattaaatcaaccaattacaacttctaaccctaatt 8598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0405 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 2511 - 2453
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||||| |  || || |||| || ||||||||||||||||||||||||    
T  2511 tcaaaatcagaattcattaactacactattgaagcaaacctcacccttaccttaatttt 2453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0405; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 11219 - 11161
Alignment:
Q  103 tcaaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    ||||||||||||||||| |  || || |||| || ||||||||||||||||||||||||    
T  11219 tcaaaatcagaattcattaactacactattgaagcaaacctcacccttaccttaatttt 11161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 13767 - 13710
Alignment:
Q  104 caaaatcagaattcataacatatacaattgcagtaaacctcacccttaccttaatttt 161  Q
    |||||||| |||||| ||  ||||||||||| |||||| |||||||||||||| ||||    
T  13767 caaaatcaaaattcagaatctatacaattgcggtaaacatcacccttaccttagtttt 13710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 26949 - 26917
Alignment:
Q  124 tatacaattgcagtaaacctcacccttacctta 156  Q
    ||||||||||| |||||||||||||||||||||    
T  26949 tatacaattgcggtaaacctcacccttacctta 26917  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 3186 - 3142
Alignment:
Q  29 ctactattaaatcaaccaattacaacttataaacctaattcctaa 73  Q
    |||| ||| ||||||||||||||||||| ||| ||||||||||||    
T  3186 ctaccatttaatcaaccaattacaacttctaaccctaattcctaa 3142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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