View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_88 (Length: 209)
Name: NF18054_high_88
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_88 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 40610371 - 40610543
Alignment:
| Q |
20 |
aatttaaccttgtgcaaattaagcttgttcttattaccaattacatgttgcatatactttagtacacgttcattcattttcattcaacctatagaccatg |
119 |
Q |
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| T |
40610371 |
aatttaaccttatgcaaattaagcttgttcttattaccaattacatgttgcatatactttagtacacgttcattcattttcattcaagctatagaccatg |
40610470 |
T |
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| Q |
120 |
taactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatatt |
192 |
Q |
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| T |
40610471 |
taactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatatt |
40610543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 40627667 - 40627749
Alignment:
| Q |
110 |
atagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatatt |
192 |
Q |
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| T |
40627667 |
atagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaatatt |
40627749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 40616956 - 40617038
Alignment:
| Q |
110 |
atagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatatt |
192 |
Q |
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|||| ||||||||||||||| |||||||||| |||| | || |||| ||| |||||||||| ||||||||||||||||||| |
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| T |
40616956 |
atagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatatt |
40617038 |
T |
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